SMTL ID : 7uvd.1

Sco GlgEI-V279S in complex with cyclohexyl carbasugar

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: S.44, R.591, Q.592, G.593 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.593 Water bridges: A:R.591 PEG.4: 3 residues within 4Å: Chain B: T.426, Y.445, W.448 No protein-ligand interaction detected (PLIP)

2 x RT6: (1R,4S,5S,6R)-4-(cyclohexylamino)-5,6-dihydroxy-2-(hydroxymethyl)cyclohex-2-en-1-yl alpha-D-glucopyranoside(Non-covalent)

RT6.2: 19 residues within 4Å: Chain A: K.264, N.268, S.279, W.281, A.282, Q.324, N.352, K.355, Y.357, D.359, I.360, R.392, D.394, N.395, E.423, F.425, D.480, K.534, Y.535 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.357, A:D.480 Hydrogen bonds: A:K.264, A:N.268, A:S.279, A:Q.324, A:Q.324, A:R.392, A:R.392, A:E.423, A:D.480, A:K.534 Salt bridges: A:K.534 RT6.3: 18 residues within 4Å: Chain B: K.264, N.268, S.279, W.281, A.282, Q.324, K.355, Y.357, D.359, I.360, D.394, N.395, E.423, F.425, D.480, I.481, K.534, Y.535 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.425, B:D.480, B:I.481 Hydrogen bonds: B:K.264, B:S.279, B:Q.324, B:R.392, B:E.423, B:D.480, B:K.534, B:Y.535, B:Y.535 Salt bridges: B:K.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jayasinghe, T.D. et al., Sco GlgEI-V279S in complex with cyclohexyl carbasugar. To Be Published

Release Date

2023-05-10

Peptides

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1

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