SMTL ID : 7uy0.2 (1 other biounit)

Crystal structure of human Fgr tyrosine kinase in complex with A-419259

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.388, P.389, M.391, Y.404 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.404

1 x VSE: 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

VSE.2: 18 residues within 4Å: Chain A: L.198, V.206, A.218, K.220, M.239, V.248, L.250, I.261, T.263, E.264, F.265, M.266, S.270, D.273, L.318, D.329, F.330, L.332 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.198, A:V.206, A:V.206, A:K.220, A:V.248, A:L.250, A:I.261, A:L.318, A:L.332 Hydrogen bonds: A:T.263, A:E.264, A:M.266 Salt bridges: A:D.273, A:D.273 pi-Stacking: A:F.330

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: F.349, P.350, I.351, K.352, W.353, K.393 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.102, E.103, K.106 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: R.20, Q.176, T.177, Y.251 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 4 residues within 4Å: Chain A: K.77, E.101, S.102, E.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.102 PO4.7: 5 residues within 4Å: Chain A: I.68, Y.109, Y.137, S.147, V.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.109, A:V.148, A:Q.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, S. et al., ATP-site inhibitors induce unique conformations of the acute myeloid leukemia-associated Src-family kinase, Fgr. Structure (2022)

Release Date

2022-12-28

Peptides

Tyrosine-protein kinase Fgr: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase Fgr

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