SMTL ID : 7uy3.1

Crystal structure of human Fgr tyrosine kinase in complex with TL02-59

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

1 x OJL: 3-[(6,7-dimethoxyquinazolin-4-yl)oxy]-N-{4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-4-methylbenzamide(Non-covalent)

OJL.1: 24 residues within 4Å: Chain A: L.198, V.206, A.218, K.220, E.235, V.238, M.239, L.242, L.247, T.263, E.264, F.265, M.266, G.269, I.308, H.309, L.318, I.327, A.328, D.329, F.330, L.332, L.335, P.343 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.218, A:K.220, A:K.220, A:E.235, A:T.263, A:L.318, A:F.330, A:F.330, A:L.332, A:P.343 Hydrogen bonds: A:E.235, A:M.266, A:D.329 pi-Cation interactions: A:K.220 Halogen bonds: A:I.327

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.90, G.91, R.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.114, A:R.114

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: S.102, E.103, T.104, T.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.104

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: H.268, E.279, E.321, R.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.322 Salt bridges: A:H.268 PO4.5: 3 residues within 4Å: Chain A: S.228, K.230, D.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, S. et al., ATP-site inhibitors induce unique conformations of the acute myeloid leukemia-associated Src-family kinase, Fgr. Structure (2022)

Release Date

2022-12-28

Peptides

Tyrosine-protein kinase Fgr: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Fgr

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