SMTL ID : 7vn3.1 (1 other biounit)

Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CACACGTGTG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:Y.156 Water bridges: A:D.66 GLC-GLC.2: 15 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.63, B:R.67, B:R.67, B:E.154, B:Y.156

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: H.65, D.96, A.97, R.99, Y.177, I.330, M.331, P.332, N.333, I.334 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.331, A:N.333, A:N.333 Water bridges: A:N.333 EDO.4: 7 residues within 4Å: Chain A: M.1, W.11, E.39, P.41 Chain B: D.208, D.210, I.213 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.208 EDO.5: 6 residues within 4Å: Chain A: A.394, Y.397, T.398, R.401, N.414 Chain D: C.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.401, A:N.414, A:N.414 EDO.6: 6 residues within 4Å: Chain B: A.394, Y.397, T.398, N.414 Chain C: C.5, A.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.398, B:N.414 Water bridges: B:A.394

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nosaki, S. et al., Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants (2022)

Release Date

2022-12-07

Peptides

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1

Related Entries With Identical Sequence