SMTL ID : 7vn4.1 (1 other biounit)

Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TCCACGTGGA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.63, A:Y.156 Water bridges: A:D.66 GLC-GLC.2: 15 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.63, B:R.67, B:R.67, B:E.154, B:Y.156 Water bridges: B:E.45

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.96, A.97, Y.177, I.330, M.331, P.332, N.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.331, A:N.333 EDO.4: 6 residues within 4Å: Chain A: M.1, W.11, E.39, P.41 Chain B: D.208, I.213 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: A.394, Y.397, T.398, R.401, N.414 Chain D: C.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.401, A:R.401, A:N.414 EDO.6: 9 residues within 4Å: Chain B: H.65, D.96, A.97, R.99, Y.177, I.330, M.331, P.332, N.333 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nosaki, S. et al., Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants (2022)

Release Date

2022-12-07

Peptides

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1

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