SMTL ID : 7vn4.2 (1 other biounit)

Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TCCACGTGGA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: D.15, K.16, E.45, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156 GLC-GLC.2: 15 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.63, B:R.67, B:Y.156

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.96, A.97, Y.177, I.330, M.331, P.332, N.333 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.333 EDO.4: 4 residues within 4Å: Chain A: N.219, N.235, T.238, S.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.219 EDO.5: 7 residues within 4Å: Chain B: D.96, A.97, Y.177, I.330, M.331, P.332, N.333 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nosaki, S. et al., Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants (2022)

Release Date

2022-12-07

Peptides

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1

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