SMTL ID : 7w0c.1

Dicer2-Loqs-PD-dsRNA complex at early-translocation state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: I.6, K.7, P.8, R.9, Q.12, T.30, G.31, S.32, G.33, K.34, T.35, F.36, Y.214 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.7, A:R.9, A:Q.12, A:G.31, A:S.32, A:G.33, A:K.34, A:T.35 Salt bridges: A:K.34 pi-Stacking: A:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, S. et al., Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature (2022)

Release Date

2022-04-27

Peptides

Dicer-2, isoform A: A
Loquacious, isoform D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dicer-2, isoform A

Loquacious, isoform D

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