SMTL ID : 7w0d.1

Dicer2-LoqsPD-dsRNA complex at mid-translocation state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain D: T.35 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain E: K.34, T.35, D.469 Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 16 residues within 4Å: Chain D: I.6, K.7, P.8, R.9, Q.12, P.29, T.30, G.31, S.32, G.33, K.34, T.35, F.36, Y.214, D.469 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:K.7, D:K.7, D:R.9, D:R.9, D:Q.12, D:G.31, D:S.32, D:G.33, D:K.34, D:T.35 Salt bridges: D:K.34 pi-Stacking: D:F.36 ADP.4: 14 residues within 4Å: Chain E: I.6, K.7, R.9, Q.12, G.31, S.32, G.33, K.34, T.35, F.36, Y.214, D.469, R.496 Ligands: MG.3 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:K.7, E:K.7, E:R.9, E:G.31, E:S.32, E:G.33, E:K.34, E:T.35 Salt bridges: E:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, S. et al., Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature (2022)

Release Date

2022-04-27

Peptides

Loquacious, isoform D: AC
Dicer-2, isoform A: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
G

D
A

E
F

Loquacious, isoform D

Dicer-2, isoform A

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