SMTL ID : 7w0e.1

dmDicer2-LoqsPD-dsRNA Active-dicing status

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain B: G.33 Chain C: E.1213, D.1368 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.1368 MG.2: 3 residues within 4Å: Chain A: C.23 Chain C: D.1614, E.1617 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.1614 MG.3: 2 residues within 4Å: Chain C: D.469 Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 16 residues within 4Å: Chain C: I.6, K.7, P.8, R.9, Q.12, P.29, G.31, S.32, G.33, K.34, T.35, F.36, R.79, Y.214, D.469 Ligands: MG.3 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:K.7, C:R.9, C:R.9, C:G.31, C:S.32, C:G.33, C:K.34, C:T.35, C:T.35, C:T.35, C:R.79, C:R.79 Salt bridges: C:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, S. et al., Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature (2022)

Release Date

2022-04-27

Peptides

Dicer-2, isoform A: C
Loquacious, isoform D: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Dicer-2, isoform A

Loquacious, isoform D

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