SMTL ID : 7wgn.1

X-ray structure of human PPAR delta ligand binding domain-pemafibrate co-crystals obtained by co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x P7F: (2~{R})-2-[3-[[1,3-benzoxazol-2-yl-[3-(4-methoxyphenoxy)propyl]amino]methyl]phenoxy]butanoic acid(Non-covalent)

P7F.1: 28 residues within 4Å: Chain A: M.27, I.48, L.54, W.63, V.80, F.81, R.83, C.84, Q.85, T.87, T.88, H.122, I.125, F.126, M.128, L.129, I.132, L.138, V.140, V.147, L.152, I.162, I.163, K.166, H.248, M.252, L.268, Y.272 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.80, A:F.81, A:R.83, A:Q.85, A:M.128, A:L.129, A:L.129, A:I.132, A:L.138, A:V.140, A:I.162, A:I.163, A:I.163 Hydrogen bonds: A:T.88 Salt bridges: A:H.122, A:H.248 pi-Stacking: A:F.126

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 9 residues within 4Å: Chain A: G.69, P.71, Y.82, Q.85, C.86, S.263, L.264, H.265, P.266 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.266 Hydrogen bonds: A:Q.85, A:H.265, A:H.265 Water bridges: A:H.265 Salt bridges: A:H.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Honda, A. et al., Functional and Structural Insights into Human PPAR alpha / delta / gamma Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate. Int J Mol Sci (2022)

Release Date

2022-05-25

Peptides

Peroxisome proliferator-activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor delta

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