SMTL ID : 7xck.1

Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with S309 fab (local refinement)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zhao, Z. et al., Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape. Nat Commun (2022)
Release Date
2022-08-31
Peptides
S309 heavy chain: A
S309 light chain: B
Spike protein S1: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
M

S309 heavy chain

S309 light chain

Spike protein S1

Related Entries With Identical Sequence

6ws6.1 | 6ws6.2 | 6ws6.3 | 7bep.1 | 7bep.2 | 7jx3.1 | 7l0n.1 | 7l0n.2 | 7r6w.1 | 7r6x.1 | 7tly.1 | 7tn0.1 | 7tn0.2 | 7x1m.1 | 7xco.1 | 7yqx.1 | 7yqy.1 | 7yqz.1 | 7yr0.1 | 8df5.1 | 8dw2.1 | 8dw3.1 | 8fxb.1 | 8fxc.1 | 8s9g.1 | 8y6a.1 | 9au1.1