- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-1-3-mer
- Ligands
- 221 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
- 2 x PQN: PHYLLOQUINONE(Non-covalent)
PQN.43: 14 residues within 4Å:- Chain A: M.675, F.676, S.679, R.681, W.684, A.708, L.709, G.714
- Chain J: F.19
- Ligands: CLA.4, CLA.40, CLA.41, BCR.106, CLA.107
8 PLIP interactions:1 interactions with chain J, 7 interactions with chain A- Hydrophobic interactions: J:F.19, A:F.676, A:F.676, A:W.684, A:L.709
- Hydrogen bonds: A:S.679, A:L.709
- pi-Stacking: A:W.684
PQN.97: 16 residues within 4Å:- Chain B: W.21, M.661, F.662, S.665, W.666, R.667, W.670, A.698, L.699, A.704
- Ligands: CLA.33, CLA.94, CLA.95, BCR.102, DGD.103, BCR.133
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:W.21, B:F.662, B:R.667, B:W.670, B:W.670, B:L.699, B:A.704
- Hydrogen bonds: B:L.699
- 15 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.44: 23 residues within 4Å:- Chain A: W.39, N.40, H.42, A.43, D.44, F.389, R.562, W.579, L.586, S.710, V.712, Q.713, A.716, L.723, I.727
- Ligands: CLA.4, CLA.5, CLA.7, CLA.9, CLA.12, CLA.30, CLA.41, BCR.50
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:W.39, A:W.39, A:H.42, A:F.389, A:F.389, A:L.586, A:L.723, A:I.727
- Hydrogen bonds: A:D.44, A:R.562, A:S.710
- Salt bridges: A:R.562, A:R.562
LHG.45: 9 residues within 4Å:- Chain A: K.319, G.320, P.321, F.322, T.323, H.327
- Ligands: CLA.24, CLA.31, CLA.136
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.322, A:T.323
LHG.55: 11 residues within 4Å:- Chain A: K.12, T.13, S.14, F.15
- Chain J: M.1, V.4
- Chain P: W.15, L.29, G.30, S.33
- Ligands: CLA.12
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain P- Hydrophobic interactions: A:F.15, P:L.29
- Salt bridges: A:K.12
LHG.142: 8 residues within 4Å:- Chain B: P.309, P.310, R.313
- Chain O: L.27, N.33, F.37
- Ligands: CLA.93, CLA.96
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain O- Salt bridges: B:R.313
- Hydrophobic interactions: O:L.27
- Hydrogen bonds: O:G.26, O:N.33
LHG.160: 6 residues within 4Å:- Chain O: K.146, L.150
- Ligands: CHL.143, CLA.144, CLA.152, BCR.216
2 PLIP interactions:2 interactions with chain O- Hydrophobic interactions: O:L.150
- Salt bridges: O:K.146
LHG.179: 9 residues within 4Å:- Chain P: F.24, K.163, R.166, L.167, L.170
- Ligands: CHL.161, CHL.162, CLA.170, BCR.197
3 PLIP interactions:3 interactions with chain P- Hydrophobic interactions: P:R.166, P:L.170
- Salt bridges: P:K.163
LHG.217: 8 residues within 4Å:- Chain R: Y.24, K.162, L.166, L.169
- Ligands: BCR.178, CLA.200, CLA.201, CLA.209
3 PLIP interactions:3 interactions with chain R- Hydrogen bonds: R:Y.24, R:L.166
- Salt bridges: R:K.162
LHG.218: 9 residues within 4Å:- Chain F: P.124, S.131
- Chain R: W.6, L.7, S.10, E.11, P.28
- Ligands: LMG.123, CLA.200
6 PLIP interactions:2 interactions with chain F, 4 interactions with chain R- Hydrogen bonds: F:S.131, R:S.10, R:S.10, R:E.11
- Salt bridges: F:K.132
- Hydrophobic interactions: R:W.6
LHG.235: 7 residues within 4Å:- Chain S: K.146, R.149, L.150
- Ligands: CHL.219, CLA.220, CLA.228, BCR.288
3 PLIP interactions:3 interactions with chain S- Hydrophobic interactions: S:L.150
- Salt bridges: S:K.146, S:K.146
LHG.254: 8 residues within 4Å:- Chain T: P.4, F.24, K.163, L.170
- Ligands: CHL.236, CHL.237, CLA.245, BCR.271
2 PLIP interactions:2 interactions with chain T- Hydrophobic interactions: T:L.170
- Salt bridges: T:K.163
LHG.289: 6 residues within 4Å:- Chain V: K.162
- Ligands: BCR.253, CLA.273, CLA.274, CLA.281, CLA.283
1 PLIP interactions:1 interactions with chain V- Salt bridges: V:K.162
LHG.308: 9 residues within 4Å:- Chain W: Y.55, K.192, R.195, L.196, M.199
- Ligands: CHL.291, CLA.292, CLA.301, CLA.303
5 PLIP interactions:5 interactions with chain W- Hydrophobic interactions: W:R.195, W:L.196
- Hydrogen bonds: W:Y.55
- Salt bridges: W:K.192, W:K.192
LHG.325: 8 residues within 4Å:- Chain X: P.18, Y.40, K.178, L.182, F.185
- Ligands: CHL.309, CLA.319, CLA.321
4 PLIP interactions:4 interactions with chain X- Hydrophobic interactions: X:L.182, X:L.182, X:F.185
- Salt bridges: X:K.178
LHG.345: 10 residues within 4Å:- Chain Y: Y.40, K.178, R.181, L.182, F.185
- Ligands: XAT.326, CHL.328, CLA.329, CLA.338, CLA.340
7 PLIP interactions:7 interactions with chain Y- Hydrophobic interactions: Y:R.181, Y:L.182, Y:F.185, Y:F.185
- Hydrogen bonds: Y:Y.40
- Salt bridges: Y:K.178, Y:K.178
LHG.364: 9 residues within 4Å:- Chain N: L.10
- Chain Z: Y.40, K.178, L.182, F.185
- Ligands: CHL.346, CLA.356, CLA.358, XAT.362
4 PLIP interactions:4 interactions with chain Z- Hydrophobic interactions: Z:L.182, Z:F.185
- Salt bridges: Z:K.178, Z:K.178
- 33 x BCR: BETA-CAROTENE(Non-covalent)
BCR.46: 12 residues within 4Å:- Chain A: T.151, G.154, G.155, F.158, L.197, A.201
- Ligands: CLA.6, CLA.15, CLA.16, BCR.47, BCR.54, CLA.180
Ligand excluded by PLIPBCR.47: 9 residues within 4Å:- Chain A: L.197, G.198
- Ligands: CLA.6, CLA.7, CLA.14, CLA.15, CLA.19, CLA.29, BCR.46
Ligand excluded by PLIPBCR.48: 14 residues within 4Å:- Chain A: L.334, A.340, I.344, A.398, F.401
- Chain N: F.71, I.72, T.75
- Ligands: CLA.21, CLA.24, CLA.25, CLA.26, BCR.49, CLA.136
Ligand excluded by PLIPBCR.49: 13 residues within 4Å:- Chain A: A.347, M.348, S.351, A.395, V.537, L.540, L.541, V.544
- Ligands: CLA.21, CLA.26, CLA.27, CLA.35, BCR.48
Ligand excluded by PLIPBCR.50: 13 residues within 4Å:- Chain A: G.665, F.668, V.669, L.724, W.731
- Ligands: CLA.9, CLA.28, CLA.41, LHG.44, CLA.52, CLA.87, CLA.88, BCR.121
Ligand excluded by PLIPBCR.54: 17 residues within 4Å:- Chain A: L.200, L.250, F.253, L.295, H.299, I.307
- Chain K: P.27, A.61, A.64, L.65
- Ligands: CLA.16, CLA.20, CLA.22, CLA.23, BCR.46, CLA.127, BCR.128
Ligand excluded by PLIPBCR.98: 9 residues within 4Å:- Chain B: L.53, I.56, L.181, S.185
- Ligands: CLA.60, CLA.61, CLA.67, CLA.68, CLA.83
Ligand excluded by PLIPBCR.99: 9 residues within 4Å:- Chain B: L.64, G.137, F.140, L.141, W.208
- Ligands: CLA.69, CLA.70, CLA.83, BCR.111
Ligand excluded by PLIPBCR.100: 9 residues within 4Å:- Chain B: F.386, M.410
- Ligands: CLA.78, CLA.81, CLA.85, CLA.93, CLA.96, BCR.101, CLA.145
Ligand excluded by PLIPBCR.101: 16 residues within 4Å:- Chain B: F.331, G.334, L.335, A.338, M.382, F.386, G.389, F.392, F.393, A.537
- Ligands: CLA.73, CLA.80, CLA.81, CLA.89, CLA.90, BCR.100
Ligand excluded by PLIPBCR.102: 12 residues within 4Å:- Chain A: I.435
- Chain B: W.647, M.648, F.651, W.670
- Ligands: CLA.33, CLA.42, CLA.58, CLA.63, CLA.64, CLA.95, PQN.97
Ligand excluded by PLIPBCR.106: 12 residues within 4Å:- Chain B: F.430
- Chain F: P.86, V.89, F.90, I.93
- Ligands: CLA.2, CLA.41, PQN.43, CLA.87, CLA.88, CLA.109, BCR.122
Ligand excluded by PLIPBCR.108: 11 residues within 4Å:- Chain F: V.73, F.83, G.95, G.98, W.99, R.102, W.136, A.140
- Ligands: CLA.86, CLA.92, CLA.110
Ligand excluded by PLIPBCR.111: 16 residues within 4Å:- Chain B: L.187, L.221, F.224, F.225, V.281, I.284, H.288
- Chain G: A.74, W.75, L.78
- Ligands: CLA.70, CLA.75, CLA.76, CLA.77, BCR.99, BCR.115
Ligand excluded by PLIPBCR.115: 14 residues within 4Å:- Chain B: W.229
- Chain G: L.16, V.72, L.73, G.76, A.77, H.80, A.81, F.84
- Ligands: CLA.71, CLA.75, BCR.111, CLA.113, CLA.114
Ligand excluded by PLIPBCR.118: 12 residues within 4Å:- Chain I: I.14, G.15, L.16, F.18, P.19
- Ligands: CLA.33, CLA.62, CLA.63, CLA.64, CLA.65, CLA.94, BCR.129
Ligand excluded by PLIPBCR.119: 15 residues within 4Å:- Chain A: W.108, I.110
- Chain J: Y.7, P.12, V.13, T.16, G.20, I.27, R.31
- Ligands: CLA.4, CLA.10, CLA.12, LMU.53, CLA.120, BCR.121
Ligand excluded by PLIPBCR.121: 13 residues within 4Å:- Chain A: I.75
- Chain J: A.23, L.26, N.30
- Ligands: CLA.4, CLA.7, CLA.8, CLA.9, CLA.10, BCR.50, LMU.53, CLA.88, BCR.119
Ligand excluded by PLIPBCR.122: 20 residues within 4Å:- Chain B: F.427, H.431, L.435, I.454, F.516
- Chain F: R.51, E.82, F.83, P.86
- Chain J: F.33, P.34, A.36, L.37, V.38, L.39, P.40
- Ligands: CLA.87, CLA.88, CLA.92, BCR.106
Ligand excluded by PLIPBCR.128: 9 residues within 4Å:- Chain K: L.60, G.63, A.64, H.67, V.68
- Ligands: BCR.54, CLA.124, CLA.126, CLA.301
Ligand excluded by PLIPBCR.129: 14 residues within 4Å:- Chain B: L.686
- Chain I: L.16
- Chain L: F.63, A.82, I.89
- Ligands: CLA.32, CLA.33, CLA.34, CLA.38, CLA.42, CLA.65, CLA.94, BCR.118, CLA.131
Ligand excluded by PLIPBCR.133: 17 residues within 4Å:- Chain B: I.24, V.690
- Chain I: M.23, L.26
- Chain L: H.55, C.93, L.94, Y.97, W.138
- Ligands: CLA.33, CLA.42, CLA.59, CLA.64, CLA.94, CLA.95, PQN.97, CLA.131
Ligand excluded by PLIPBCR.134: 11 residues within 4Å:- Chain L: L.53, A.54, Y.57, S.144, A.147, W.148
- Ligands: CLA.34, CLA.117, CLA.130, CLA.131, CLA.132
Ligand excluded by PLIPBCR.135: 10 residues within 4Å:- Chain B: L.58
- Chain M: I.10, L.13, A.16, F.17, G.20, A.23, G.27
- Ligands: CLA.59, CLA.62
Ligand excluded by PLIPBCR.140: 6 residues within 4Å:- Chain N: K.8, L.10, I.13, Q.78
- Ligands: CLA.137, CLA.139
Ligand excluded by PLIPBCR.178: 11 residues within 4Å:- Chain P: L.98, F.99, W.101, V.121
- Ligands: CLA.164, CHL.165, CHL.167, CHL.174, CLA.200, CLA.209, LHG.217
Ligand excluded by PLIPBCR.197: 13 residues within 4Å:- Chain Q: L.106, M.107, F.109, F.129, L.130
- Ligands: CHL.161, CLA.170, LHG.179, CLA.183, CLA.184, CHL.186, CLA.193, BCR.198
Ligand excluded by PLIPBCR.198: 11 residues within 4Å:- Chain Q: L.53, A.56, I.59, V.63, L.64, L.132, I.149, F.150
- Ligands: CHL.186, LUT.195, BCR.197
Ligand excluded by PLIPBCR.216: 12 residues within 4Å:- Chain R: W.51, L.98, M.99, W.101, I.121
- Ligands: CHL.143, CLA.152, LHG.160, CLA.203, CHL.204, CHL.206, CHL.213
Ligand excluded by PLIPBCR.253: 10 residues within 4Å:- Chain T: L.98, F.99, W.101, V.121
- Ligands: CLA.239, CHL.240, CHL.242, CHL.249, CLA.281, LHG.289
Ligand excluded by PLIPBCR.271: 11 residues within 4Å:- Chain U: L.106, F.109, R.113, F.129
- Ligands: CHL.236, CLA.245, LHG.254, CLA.257, CLA.258, CHL.260, BCR.272
Ligand excluded by PLIPBCR.272: 11 residues within 4Å:- Chain U: A.56, A.60, V.63, F.135, I.149, F.150
- Ligands: CLA.257, CHL.260, CLA.264, LUT.269, BCR.271
Ligand excluded by PLIPBCR.288: 11 residues within 4Å:- Chain V: L.98, W.101, P.120, I.121
- Ligands: CHL.219, CLA.228, LHG.235, CLA.276, CHL.277, CHL.279, CHL.285
Ligand excluded by PLIP- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.51: 10 residues within 4Å:- Chain A: C.565, G.567, P.568, C.574, R.715
- Chain B: C.558, G.560, C.567, W.666, R.705
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B,- Metal complexes: A:C.565, A:C.574, B:C.558, B:C.567
SF4.104: 12 residues within 4Å:- Chain C: C.20, P.21, T.22, V.24, C.47, V.48, G.49, C.50, K.51, R.52, C.53, V.66
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.20, C:C.47, C:C.50, C:C.53
SF4.105: 10 residues within 4Å:- Chain C: C.10, I.11, G.12, C.13, T.14, C.16, A.56, C.57, P.58, V.64
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.10, C:C.13, C:C.16, C:C.57
- 5 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)
LMU.53: 5 residues within 4Å:- Chain A: W.108
- Ligands: CLA.8, BCR.119, CLA.120, BCR.121
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.108
- Hydrogen bonds: A:W.108
LMU.56: 9 residues within 4Å:- Chain A: I.233, L.234, N.235, R.236
- Chain Q: T.190, G.191, I.216
- Ligands: CLA.16, LMU.199
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain Q- Hydrophobic interactions: A:I.233
- Hydrogen bonds: A:L.234, A:R.236, Q:T.190
LMU.141: 9 residues within 4Å:- Chain N: G.19, R.84
- Chain Y: Y.137, G.141
- Chain Z: P.23, F.24, G.26
- Ligands: CLA.138, LMU.327
3 PLIP interactions:3 interactions with chain N- Hydrogen bonds: N:R.84
- Salt bridges: N:R.84, N:R.84
LMU.199: 12 residues within 4Å:- Chain A: L.234
- Chain Q: W.78, Q.80, I.84, P.86, V.87, F.184, A.187, I.188, G.191
- Ligands: LMU.56, CLA.185
8 PLIP interactions:7 interactions with chain Q, 1 interactions with chain A- Hydrophobic interactions: Q:W.78, Q:V.87, Q:F.184, Q:A.187, Q:I.188
- Hydrogen bonds: Q:Q.80, Q:P.86, A:L.234
LMU.327: 9 residues within 4Å:- Chain K: G.36, L.37, K.38
- Chain N: R.84
- Chain Y: G.142, P.143
- Ligands: CLA.138, LMU.141, NEX.344
4 PLIP interactions:1 interactions with chain K, 2 interactions with chain N, 1 interactions with chain Y- Hydrogen bonds: K:G.36, N:R.84, Y:P.143
- Salt bridges: N:R.84
- 1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.103: 21 residues within 4Å:- Chain B: S.8, L.11, W.21, F.22, A.25, T.26, S.32, S.555, W.572, F.575, Q.703, L.706, S.713, V.714
- Ligands: CLA.59, CLA.61, CLA.64, CLA.82, CLA.84, CLA.95, PQN.97
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:A.25, B:F.575, B:Q.703
- Hydrogen bonds: B:S.8, B:T.26
- 4 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.116: 7 residues within 4Å:- Chain B: P.483
- Chain G: F.98
- Ligands: CLA.89, CLA.90, CLA.112, CHL.148, CLA.156
No protein-ligand interaction detected (PLIP)LMG.123: 9 residues within 4Å:- Chain F: I.121, D.122, V.123, L.127
- Chain J: K.5, T.6, S.9
- Ligands: CLA.107, LHG.218
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:T.6, J:S.9
LMG.175: 3 residues within 4Å:- Chain P: L.37, W.40, W.107
No protein-ligand interaction detected (PLIP)LMG.250: 3 residues within 4Å:- Chain T: W.40
- Chain W: F.60, K.61
3 PLIP interactions:2 interactions with chain W, 1 interactions with chain T- Hydrogen bonds: W:K.61, T:W.40
- Salt bridges: W:K.61
- 50 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
CHL.143: 15 residues within 4Å:- Chain O: E.1, W.2, L.3, P.4, F.20
- Chain R: L.97, A.100, W.101, S.104, R.105, A.108, P.120
- Ligands: CLA.144, LHG.160, BCR.216
12 PLIP interactions:6 interactions with chain O, 6 interactions with chain R,- Hydrophobic interactions: O:W.2, O:W.2, O:W.2, O:P.4, R:L.97, R:W.101, R:W.101, R:W.101
- pi-Stacking: O:W.2
- Metal complexes: O:W.2
- Hydrogen bonds: R:R.105
- Salt bridges: R:R.105
CHL.148: 12 residues within 4Å:- Chain O: V.67, Q.70, A.73, A.74, L.96, E.99
- Ligands: LMG.116, CLA.145, CLA.147, CLA.150, CLA.156, XAT.159
3 PLIP interactions:3 interactions with chain O,- Hydrophobic interactions: O:A.73, O:A.74, O:L.96
CHL.161: 17 residues within 4Å:- Chain P: P.4, L.5, W.6, F.7, P.8, F.24
- Chain Q: A.105, F.109, H.112, R.113, Q.116, M.124, F.129
- Ligands: CHL.162, LHG.179, CLA.194, BCR.197
11 PLIP interactions:8 interactions with chain P, 3 interactions with chain Q,- Hydrophobic interactions: P:P.4, P:W.6, P:W.6, P:F.7, P:P.8, P:F.24, Q:A.105, Q:F.109
- pi-Stacking: P:W.6
- Metal complexes: P:W.6
- Hydrogen bonds: Q:R.113
CHL.162: 18 residues within 4Å:- Chain P: L.16, P.21, G.22, D.23, F.24, G.25, F.26, L.31, F.41, V.42, A.44, E.45, R.166, M.169
- Ligands: CHL.161, CLA.163, XAT.177, LHG.179
11 PLIP interactions:11 interactions with chain P,- Hydrophobic interactions: P:F.24, P:F.26, P:L.31, P:V.42, P:A.44, P:R.166
- Hydrogen bonds: P:F.24, P:F.26
- pi-Cation interactions: P:R.166, P:R.166
- Metal complexes: P:E.45
CHL.165: 11 residues within 4Å:- Chain P: A.79, G.80, Y.84, F.85, L.91, E.95, F.99
- Ligands: CLA.164, CHL.166, XAT.177, BCR.178
6 PLIP interactions:6 interactions with chain P,- Hydrophobic interactions: P:Y.84, P:F.85, P:L.91, P:E.95, P:F.99, P:F.99
CHL.166: 10 residues within 4Å:- Chain P: W.76, N.77, V.78, G.80, D.81, F.92, E.95
- Ligands: CLA.163, CHL.165, XAT.177
4 PLIP interactions:4 interactions with chain P,- Hydrophobic interactions: P:W.76, P:F.92
- Hydrogen bonds: P:G.80, P:D.81
CHL.167: 16 residues within 4Å:- Chain P: R.50, W.51, W.101, A.102, R.105, R.106, D.109, V.116, G.133, P.135, W.139, F.140
- Ligands: CLA.169, CHL.174, LUT.176, BCR.178
10 PLIP interactions:10 interactions with chain P,- Hydrophobic interactions: P:R.105, P:D.109, P:V.116, P:P.135, P:W.139, P:F.140, P:F.140
- Hydrogen bonds: P:R.50, P:R.105
- pi-Cation interactions: P:R.106
CHL.174: 14 residues within 4Å:- Chain P: W.101, R.105, V.116, N.117, V.118, D.119, P.120, V.121, N.125, L.127, L.138, W.139
- Ligands: CHL.167, BCR.178
9 PLIP interactions:9 interactions with chain P,- Hydrophobic interactions: P:V.121, P:N.125, P:L.127, P:L.127, P:L.127, P:W.139, P:W.139, P:W.139, P:W.139
CHL.186: 17 residues within 4Å:- Chain Q: Y.42, I.46, R.49, F.50, A.110, R.113, R.114, D.117, F.129, L.136, G.138, P.142, P.145, F.150
- Ligands: CLA.188, BCR.197, BCR.198
9 PLIP interactions:9 interactions with chain Q,- Hydrophobic interactions: Q:A.110, Q:R.114, Q:D.117, Q:F.129, Q:L.136, Q:L.136, Q:P.145
- Hydrogen bonds: Q:R.49
- pi-Cation interactions: Q:R.114
CHL.204: 9 residues within 4Å:- Chain R: Y.84, F.85, L.91, E.95
- Ligands: CLA.203, CHL.205, CLA.207, XAT.215, BCR.216
4 PLIP interactions:4 interactions with chain R,- Hydrophobic interactions: R:Y.84, R:F.85, R:L.91, R:E.95
CHL.205: 10 residues within 4Å:- Chain R: Y.77, K.78, G.80, D.81, Q.88, E.95, F.175
- Ligands: CLA.202, CHL.204, XAT.215
3 PLIP interactions:3 interactions with chain R,- Hydrophobic interactions: R:Q.88, R:F.175
- Hydrogen bonds: R:D.81
CHL.206: 17 residues within 4Å:- Chain R: V.47, R.50, W.51, W.101, A.102, R.105, R.106, D.109, V.116, G.133, P.135, W.139, F.140
- Ligands: CLA.208, CHL.213, LUT.214, BCR.216
11 PLIP interactions:11 interactions with chain R,- Hydrophobic interactions: R:A.102, R:R.105, R:R.106, R:D.109, R:P.135, R:P.135, R:W.139, R:F.140
- Hydrogen bonds: R:R.50, R:R.105
- pi-Cation interactions: R:R.106
CHL.213: 12 residues within 4Å:- Chain R: W.101, R.105, D.119, P.120, I.121, F.122, N.125, L.127, L.138, W.139
- Ligands: CHL.206, BCR.216
10 PLIP interactions:10 interactions with chain R,- Hydrophobic interactions: R:I.121, R:F.122, R:N.125, R:L.127, R:L.127, R:W.139
- pi-Stacking: R:W.139, R:W.139, R:W.139
- Metal complexes: R:D.119
CHL.219: 15 residues within 4Å:- Chain S: E.1, W.2, L.3, P.4, F.20, F.22, R.149
- Chain V: W.101, S.104, R.105, A.108, P.120
- Ligands: CLA.220, LHG.235, BCR.288
12 PLIP interactions:7 interactions with chain S, 5 interactions with chain V,- Hydrophobic interactions: S:W.2, S:W.2, S:F.22, S:F.22, V:W.101, V:W.101, V:P.120
- Hydrogen bonds: S:R.149, V:R.105
- pi-Stacking: S:W.2
- Metal complexes: S:W.2
- Salt bridges: V:R.105
CHL.224: 5 residues within 4Å:- Chain S: Q.70, K.71, L.96
- Ligands: CLA.223, XAT.234
2 PLIP interactions:2 interactions with chain S,- Hydrophobic interactions: S:Q.70, S:L.96
CHL.236: 15 residues within 4Å:- Chain T: L.5, W.6, F.7, P.8, F.24, F.26
- Chain U: F.109, H.112, R.113, M.124, Y.128, F.129
- Ligands: LHG.254, CLA.268, BCR.271
12 PLIP interactions:7 interactions with chain T, 5 interactions with chain U,- Hydrophobic interactions: T:W.6, T:F.7, T:P.8, T:F.24, T:F.26, U:F.109, U:Y.128, U:F.129
- pi-Stacking: T:W.6
- Metal complexes: T:W.6
- Hydrogen bonds: U:R.113
- Salt bridges: U:R.113
CHL.237: 17 residues within 4Å:- Chain T: L.16, L.20, G.22, D.23, F.24, G.25, F.26, L.31, G.32, F.41, V.42, E.45, R.166, M.169
- Ligands: CLA.238, XAT.252, LHG.254
14 PLIP interactions:14 interactions with chain T,- Hydrophobic interactions: T:F.24, T:F.26, T:L.31, T:F.41, T:F.41, T:V.42, T:E.45, T:E.45
- Hydrogen bonds: T:D.23, T:F.24, T:F.26, T:R.166
- pi-Cation interactions: T:R.166, T:R.166
CHL.240: 8 residues within 4Å:- Chain T: F.85, L.91, E.95, L.98
- Ligands: CLA.239, CHL.241, XAT.252, BCR.253
4 PLIP interactions:4 interactions with chain T,- Hydrophobic interactions: T:F.85, T:L.91, T:L.91, T:L.98
CHL.241: 8 residues within 4Å:- Chain T: N.77, V.78, G.80, D.81, P.88, F.92
- Ligands: CHL.240, XAT.252
3 PLIP interactions:3 interactions with chain T,- Hydrophobic interactions: T:F.92
- Hydrogen bonds: T:G.80, T:D.81
CHL.242: 17 residues within 4Å:- Chain T: R.50, W.51, F.99, A.102, R.105, R.106, D.109, V.116, L.127, G.133, P.135, W.139, F.140
- Ligands: CLA.244, CHL.249, LUT.251, BCR.253
12 PLIP interactions:12 interactions with chain T,- Hydrophobic interactions: T:F.99, T:A.102, T:L.127, T:P.135, T:P.135, T:W.139, T:F.140, T:F.140
- Hydrogen bonds: T:R.50, T:R.106
- pi-Cation interactions: T:R.106, T:R.106
CHL.249: 13 residues within 4Å:- Chain T: W.101, R.105, N.117, V.118, D.119, P.120, F.122, N.125, K.126, L.127, W.139
- Ligands: CHL.242, BCR.253
5 PLIP interactions:5 interactions with chain T,- Hydrophobic interactions: T:F.122, T:N.125, T:L.127, T:W.139, T:W.139
CHL.260: 11 residues within 4Å:- Chain U: A.110, R.113, R.114, D.117, M.124, L.136, P.145, F.150
- Ligands: CLA.262, BCR.271, BCR.272
8 PLIP interactions:8 interactions with chain U,- Hydrophobic interactions: U:R.114, U:D.117, U:M.124, U:L.136, U:L.136, U:P.145, U:P.145
- pi-Stacking: U:F.150
CHL.277: 10 residues within 4Å:- Chain V: W.51, F.85, L.91, E.95, L.98
- Ligands: CLA.276, CHL.278, CLA.280, XAT.287, BCR.288
4 PLIP interactions:4 interactions with chain V,- Hydrophobic interactions: V:W.51, V:L.91, V:L.98
- Metal complexes: V:E.95
CHL.278: 7 residues within 4Å:- Chain V: Y.77, D.81, Q.88, F.92
- Ligands: CLA.275, CHL.277, XAT.287
2 PLIP interactions:2 interactions with chain V,- Hydrophobic interactions: V:Y.77, V:F.92
CHL.279: 18 residues within 4Å:- Chain V: R.50, W.51, W.101, A.102, R.105, R.106, D.109, V.116, N.117, L.127, G.133, P.135, W.139, F.140
- Ligands: CHL.285, LUT.286, BCR.288, CLA.290
11 PLIP interactions:11 interactions with chain V,- Hydrophobic interactions: V:W.51, V:A.102, V:D.109, V:V.116, V:L.127, V:P.135, V:P.135, V:W.139, V:F.140, V:F.140
- Hydrogen bonds: V:R.50
CHL.285: 12 residues within 4Å:- Chain V: W.101, R.105, D.119, I.121, F.122, N.125, L.127, L.138, W.139, F.140
- Ligands: CHL.279, BCR.288
9 PLIP interactions:9 interactions with chain V,- Hydrophobic interactions: V:I.121, V:F.122, V:N.125, V:L.127, V:L.127, V:W.139, V:W.139, V:F.140
- Hydrogen bonds: V:N.125
CHL.291: 10 residues within 4Å:- Chain W: P.31, L.32, W.33, K.34, F.37, Y.55, C.57
- Ligands: CLA.292, LUT.305, LHG.308
6 PLIP interactions:6 interactions with chain W,- Hydrophobic interactions: W:P.31, W:W.33, W:F.37, W:F.37, W:Y.55
- Metal complexes: W:W.33
CHL.295: 9 residues within 4Å:- Chain W: G.128, F.129, I.130, N.131, A.132, H.133, S.134
- Chain Y: L.80
- Ligands: CHL.296
7 PLIP interactions:7 interactions with chain W,- Hydrophobic interactions: W:I.130, W:A.132, W:H.133
- Hydrogen bonds: W:I.130, W:H.133, W:S.134
- Metal complexes: W:I.130
CHL.296: 12 residues within 4Å:- Chain W: I.121, I.130, A.132, V.141, Q.142, L.145, M.146
- Ligands: CLA.294, CHL.295, CHL.297, LUT.305, NEX.307
4 PLIP interactions:4 interactions with chain W,- Hydrophobic interactions: W:I.121, W:I.130, W:A.132, W:L.145
CHL.297: 10 residues within 4Å:- Chain W: F.109, N.110, G.112, A.113, F.116, L.135, I.139
- Ligands: CLA.293, CHL.296, XAT.306
6 PLIP interactions:6 interactions with chain W,- Hydrophobic interactions: W:F.109, W:F.116, W:L.135, W:I.139
- Hydrogen bonds: W:G.112, W:A.113
CHL.298: 14 residues within 4Å:- Chain W: M.78, R.81, W.82, L.85, A.152, R.153, F.156, P.158, P.163, F.164, P.166, F.171
- Ligands: CLA.300, NEX.307
6 PLIP interactions:6 interactions with chain W,- Hydrophobic interactions: W:A.152, W:R.153, W:P.166
- Hydrogen bonds: W:R.81
- pi-Stacking: W:F.171
- pi-Cation interactions: W:R.153
CHL.299: 12 residues within 4Å:- Chain W: T.74, Q.75, M.78, N.79, W.82, M.146, G.147, E.150, R.153, I.154, F.164
- Ligands: CLA.293
6 PLIP interactions:6 interactions with chain W,- Hydrophobic interactions: W:M.78, W:W.82, W:M.146, W:E.150, W:I.154
- Salt bridges: W:R.153
CHL.309: 10 residues within 4Å:- Chain X: P.18, K.19, Y.20, L.21, P.23, Y.40, W.42
- Ligands: CLA.310, LHG.325, CHL.354
5 PLIP interactions:5 interactions with chain X,- Hydrophobic interactions: X:P.18, X:Y.20, X:L.21, X:Y.40
- Metal complexes: X:Y.20
CHL.313: 9 residues within 4Å:- Chain X: P.112, S.113, L.114, V.115, H.116, A.117, Q.118, I.123
- Ligands: CHL.314
4 PLIP interactions:4 interactions with chain X,- Hydrophobic interactions: X:I.123
- Hydrogen bonds: X:V.115, X:Q.118
- Metal complexes: X:V.115
CHL.314: 11 residues within 4Å:- Chain X: A.96, L.106, A.117, I.123, S.126, Q.127, L.130
- Ligands: CLA.312, CHL.313, CHL.315, LUT.324
6 PLIP interactions:6 interactions with chain X,- Hydrophobic interactions: X:L.106, X:A.117, X:I.123, X:Q.127
- Hydrogen bonds: X:S.126, X:Q.127
CHL.315: 12 residues within 4Å:- Chain X: F.94, G.97, I.100, F.101, W.124
- Chain Y: W.218, A.221, F.224, V.225
- Ligands: CHL.314, LUT.324, XAT.326
6 PLIP interactions:4 interactions with chain X, 2 interactions with chain Y,- Hydrophobic interactions: X:F.94, X:I.100, X:W.124, Y:W.218, Y:W.218
- Hydrogen bonds: X:G.97
CHL.316: 15 residues within 4Å:- Chain X: R.66, W.67, L.70, V.134, E.135, Y.137, R.138, G.141, G.142, L.144, G.145, I.147, P.153, F.157
- Ligands: CLA.318
12 PLIP interactions:12 interactions with chain X,- Hydrophobic interactions: X:V.134, X:Y.137, X:R.138, X:R.138, X:L.144, X:L.144, X:I.147, X:P.153, X:F.157
- Hydrogen bonds: X:R.66, X:L.144, X:G.145
CHL.317: 14 residues within 4Å:- Chain X: E.59, L.60, I.63, H.64, W.67, G.132, E.135, R.138
- Chain Y: L.21, W.42, T.44
- Ligands: CLA.311, XAT.326, CHL.328
8 PLIP interactions:5 interactions with chain X, 3 interactions with chain Y,- Hydrophobic interactions: X:I.63, X:W.67, X:W.67, Y:L.21, Y:T.44
- Hydrogen bonds: X:H.64, Y:T.44
- Salt bridges: X:R.138
CHL.328: 12 residues within 4Å:- Chain Y: P.18, K.19, Y.20, L.21, G.22, P.23, Y.40, W.42
- Ligands: CHL.317, XAT.326, CLA.329, LHG.345
6 PLIP interactions:6 interactions with chain Y,- Hydrophobic interactions: Y:P.18, Y:Y.20, Y:L.21, Y:Y.40, Y:W.42
- Metal complexes: Y:Y.20
CHL.332: 10 residues within 4Å:- Chain Y: S.113, L.114, V.115, H.116, A.117, Q.118, S.119, A.122, I.123
- Ligands: CHL.333
9 PLIP interactions:9 interactions with chain Y,- Hydrophobic interactions: Y:V.115, Y:H.116, Y:A.117, Y:Q.118, Y:I.123
- Hydrogen bonds: Y:V.115, Y:Q.118, Y:S.119
- Metal complexes: Y:V.115
CHL.333: 13 residues within 4Å:- Chain Y: W.67, L.106, A.117, I.120, I.123, Q.127, L.130
- Ligands: CLA.331, CHL.332, CHL.334, CHL.336, LUT.343, NEX.344
6 PLIP interactions:6 interactions with chain Y,- Hydrophobic interactions: Y:W.67, Y:L.106, Y:A.117, Y:I.120, Y:I.123, Y:Q.127
CHL.334: 17 residues within 4Å:- Chain Y: W.93, F.94, K.95, G.97, A.98, I.100, F.101, Q.127
- Chain Z: W.218, A.221, T.222, F.224, V.225, P.226
- Ligands: CHL.333, CHL.336, XAT.362
8 PLIP interactions:6 interactions with chain Y, 2 interactions with chain Z,- Hydrophobic interactions: Y:W.93, Y:F.94, Y:I.100, Y:F.101, Z:W.218, Z:W.218
- Hydrogen bonds: Y:G.97, Y:Q.127
CHL.335: 19 residues within 4Å:- Chain Y: I.63, R.66, W.67, V.134, Y.137, R.138, G.141, G.142, P.143, L.144, G.145, E.146, I.147, P.150, I.151, P.153, F.157
- Ligands: CLA.337, NEX.344
13 PLIP interactions:13 interactions with chain Y,- Hydrophobic interactions: Y:V.134, Y:Y.137, Y:R.138, Y:L.144, Y:I.147, Y:P.153, Y:P.153, Y:F.157, Y:F.157
- Hydrogen bonds: Y:R.66, Y:G.142, Y:L.144, Y:G.145
CHL.336: 17 residues within 4Å:- Chain Y: L.60, I.63, H.64, W.67, Q.127, V.128, M.131, G.132, E.135, R.138, V.139
- Chain Z: W.42, T.44
- Ligands: CLA.330, CHL.333, CHL.334, CHL.346
8 PLIP interactions:8 interactions with chain Y,- Hydrophobic interactions: Y:I.63, Y:W.67, Y:E.135, Y:E.135, Y:V.139
- Hydrogen bonds: Y:Q.127
- Salt bridges: Y:R.138
- pi-Cation interactions: Y:R.138
CHL.346: 14 residues within 4Å:- Chain N: F.15
- Chain Z: P.18, K.19, Y.20, L.21, G.22, P.23, F.24, Y.40, W.42
- Ligands: CHL.336, CLA.347, XAT.362, LHG.364
8 PLIP interactions:7 interactions with chain Z, 1 interactions with chain N,- Hydrophobic interactions: Z:P.18, Z:Y.20, Z:L.21, Z:F.24, Z:Y.40, Z:W.42, N:F.15
- Metal complexes: Z:Y.20
CHL.350: 6 residues within 4Å:- Chain Z: S.113, L.114, V.115, H.116, S.119, I.123
2 PLIP interactions:2 interactions with chain Z,- Hydrophobic interactions: Z:I.123
- Hydrogen bonds: Z:S.119
CHL.351: 12 residues within 4Å:- Chain Z: G.97, I.100, L.106, Y.108, I.123, Q.127, L.130
- Ligands: CLA.349, CHL.352, CHL.354, LUT.361, NEX.363
5 PLIP interactions:5 interactions with chain Z,- Hydrophobic interactions: Z:I.100, Z:L.106, Z:I.123, Z:L.130
- Hydrogen bonds: Z:Y.108
CHL.352: 13 residues within 4Å:- Chain X: A.221, F.224, V.225
- Chain Z: F.94, K.95, G.97, A.98, W.124, Q.127
- Ligands: CLA.348, CHL.351, CHL.354, LUT.361
5 PLIP interactions:4 interactions with chain Z, 1 interactions with chain X,- Hydrophobic interactions: Z:F.94, Z:W.124, Z:W.124, X:F.224
- Hydrogen bonds: Z:G.97
CHL.353: 15 residues within 4Å:- Chain Z: I.63, R.66, W.67, L.70, Y.137, R.138, G.141, G.142, P.143, L.144, G.145, I.147, P.153, F.157
- Ligands: CLA.355
8 PLIP interactions:8 interactions with chain Z,- Hydrophobic interactions: Z:Y.137, Z:L.144, Z:L.144, Z:I.147, Z:P.153
- Hydrogen bonds: Z:R.66, Z:L.144
- Salt bridges: Z:R.138
CHL.354: 15 residues within 4Å:- Chain X: W.42, T.44
- Chain Z: E.59, L.60, I.63, H.64, W.67, M.131, G.132, E.135, V.139
- Ligands: CHL.309, CLA.348, CHL.351, CHL.352
6 PLIP interactions:2 interactions with chain X, 4 interactions with chain Z,- Hydrogen bonds: X:T.44, X:T.44
- Hydrophobic interactions: Z:I.63, Z:W.67, Z:V.139
- Metal complexes: Z:E.135
- 16 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
LUT.158: 17 residues within 4Å:- Chain O: M.49, I.52, P.53, F.126, D.127, P.128, L.129, F.131, N.147, L.150, A.154, F.158, Q.161, P.170
- Ligands: CLA.151, CLA.153, CLA.154
Ligand excluded by PLIPLUT.176: 17 residues within 4Å:- Chain P: M.53, F.60, F.140, D.141, P.142, L.143, N.164, L.167, A.171, Q.178, P.186, L.190
- Ligands: CHL.167, CLA.169, CLA.171, CLA.172, CLA.173
Ligand excluded by PLIPLUT.195: 16 residues within 4Å:- Chain Q: M.52, A.55, F.150, N.151, F.152, L.153, F.155, A.179, Y.183, Q.186, P.194, N.197
- Ligands: CLA.188, CLA.190, CLA.191, BCR.198
Ligand excluded by PLIPLUT.214: 19 residues within 4Å:- Chain R: M.53, A.57, F.60, F.140, D.141, P.142, L.143, W.145, N.163, L.166, A.167, A.170, Q.177, P.185, L.189
- Ligands: CHL.206, CLA.208, CLA.210, CLA.211
Ligand excluded by PLIPLUT.233: 19 residues within 4Å:- Chain S: M.49, I.52, P.53, F.126, D.127, L.129, N.147, L.150, A.151, A.154, F.158, Q.161, P.170, N.173, L.174
- Ligands: CLA.227, CLA.229, CLA.230, CLA.231
Ligand excluded by PLIPLUT.251: 17 residues within 4Å:- Chain T: M.53, A.56, F.60, L.143, W.145, L.167, A.168, A.171, Q.178, P.186, N.189, L.190
- Ligands: CHL.242, CLA.244, CLA.246, CLA.247, CLA.248
Ligand excluded by PLIPLUT.269: 15 residues within 4Å:- Chain U: M.52, A.55, A.56, L.153, N.172, L.175, A.176, A.179, Y.183, Q.186, L.198
- Ligands: CLA.262, CLA.264, CLA.265, BCR.272
Ligand excluded by PLIPLUT.286: 18 residues within 4Å:- Chain V: M.53, A.57, F.60, F.140, D.141, P.142, L.143, W.145, N.163, A.167, A.170, P.185, I.186, L.189
- Ligands: CHL.279, CLA.282, CLA.283, CLA.290
Ligand excluded by PLIPLUT.304: 18 residues within 4Å:- Chain W: M.84, I.87, L.91, F.171, D.172, P.173, L.174, F.176, N.193, L.196, A.197, A.200, Q.207, S.214, Q.217
- Ligands: CLA.300, CLA.302, CLA.303
Ligand excluded by PLIPLUT.305: 19 residues within 4Å:- Chain W: C.57, D.58, I.59, N.79, W.82, A.83, G.86, G.89, C.90, W.108, T.111, M.198, M.201, A.202
- Ligands: CHL.291, CLA.292, CLA.293, CLA.294, CHL.296
Ligand excluded by PLIPLUT.323: 10 residues within 4Å:- Chain X: M.69, L.182, S.186, F.190, Q.193, P.201, N.204
- Ligands: CLA.318, CLA.320, CLA.321
Ligand excluded by PLIPLUT.324: 19 residues within 4Å:- Chain X: W.42, D.43, T.44, L.47, H.64, W.67, A.68, G.71, C.75, W.93, A.96, M.184, M.187, F.188
- Ligands: CLA.310, CLA.311, CLA.312, CHL.314, CHL.315
Ligand excluded by PLIPLUT.342: 18 residues within 4Å:- Chain Y: M.69, A.72, L.73, F.157, D.158, P.159, L.160, L.162, N.179, L.182, A.183, S.186, F.190, Q.193, P.201
- Ligands: CLA.337, CLA.339, CLA.340
Ligand excluded by PLIPLUT.343: 18 residues within 4Å:- Chain Y: W.42, D.43, T.44, A.45, A.68, G.71, G.74, C.75, W.93, A.96, M.184, M.187, F.188
- Ligands: CLA.311, CLA.329, CLA.330, CLA.331, CHL.333
Ligand excluded by PLIPLUT.360: 19 residues within 4Å:- Chain Z: M.69, L.70, A.72, F.157, D.158, P.159, L.160, N.179, A.183, S.186, F.190, Q.193, P.201, N.204, L.205
- Ligands: CLA.355, CLA.357, CLA.358, CLA.359
Ligand excluded by PLIPLUT.361: 19 residues within 4Å:- Chain Z: W.42, D.43, T.44, A.45, L.47, H.64, W.67, A.68, G.71, C.75, W.93, M.184, M.187
- Ligands: CLA.330, CLA.347, CLA.348, CLA.349, CHL.351, CHL.352
Ligand excluded by PLIP- 11 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
XAT.159: 19 residues within 4Å:- Chain O: F.22, D.23, P.24, L.25, G.26, L.27, H.44, A.51, V.55, W.66, A.69, Q.70, L.152, F.155
- Ligands: CLA.144, CLA.145, CLA.146, CLA.147, CHL.148
9 PLIP interactions:9 interactions with chain O- Hydrophobic interactions: O:F.22, O:F.22, O:L.25, O:A.51, O:L.152, O:F.155
- Hydrogen bonds: O:L.25, O:G.26, O:W.66
XAT.177: 17 residues within 4Å:- Chain P: F.26, D.27, P.28, L.29, L.31, H.48, W.51, A.52, G.55, I.59, M.169, V.172
- Ligands: CHL.162, CLA.163, CLA.164, CHL.165, CHL.166
5 PLIP interactions:5 interactions with chain P- Hydrophobic interactions: P:F.26, P:A.52, P:M.169, P:V.172
- Hydrogen bonds: P:L.29
XAT.196: 21 residues within 4Å:- Chain Q: F.20, D.21, P.22, L.23, L.25, N.47, F.50, A.51, G.54, G.57, A.58, W.78, S.81, V.83, M.177, V.180
- Ligands: CLA.181, CLA.182, CLA.183, CLA.184, CLA.185
7 PLIP interactions:7 interactions with chain Q- Hydrophobic interactions: Q:A.51, Q:V.83, Q:M.177, Q:V.180
- Hydrogen bonds: Q:L.23, Q:W.78, Q:S.81
XAT.215: 17 residues within 4Å:- Chain R: F.26, D.27, P.28, L.29, L.31, A.52, G.55, I.59, W.76, M.168, V.171, L.172
- Ligands: CLA.201, CLA.202, CLA.203, CHL.204, CHL.205
7 PLIP interactions:7 interactions with chain R- Hydrophobic interactions: R:F.26, R:L.29, R:L.29, R:A.52, R:V.171, R:L.172
- Hydrogen bonds: R:L.29
XAT.234: 18 residues within 4Å:- Chain S: F.22, D.23, P.24, L.25, L.27, H.44, A.51, V.55, W.66, Q.70, L.152, F.155, L.156
- Ligands: CLA.220, CLA.221, CLA.222, CLA.223, CHL.224
14 PLIP interactions:14 interactions with chain S- Hydrophobic interactions: S:F.22, S:P.24, S:A.51, S:V.55, S:L.152, S:L.152, S:L.152, S:F.155, S:F.155, S:F.155, S:L.156
- Hydrogen bonds: S:L.25, S:G.26, S:Q.70
XAT.252: 17 residues within 4Å:- Chain T: F.26, D.27, P.28, H.48, A.52, G.55, I.59, W.76, A.79, M.169, V.172, L.173
- Ligands: CHL.237, CLA.238, CLA.239, CHL.240, CHL.241
7 PLIP interactions:7 interactions with chain T- Hydrophobic interactions: T:F.26, T:F.26, T:A.52, T:W.76, T:L.173
- Hydrogen bonds: T:D.27, T:W.76
XAT.270: 19 residues within 4Å:- Chain U: F.20, D.21, P.22, L.23, G.24, N.47, F.50, A.51, G.54, G.57, A.58, W.78, S.81, V.83, M.177, V.180
- Ligands: CLA.255, CLA.256, CLA.257
8 PLIP interactions:8 interactions with chain U- Hydrophobic interactions: U:A.51, U:W.78, U:V.83, U:M.177, U:V.180
- Hydrogen bonds: U:D.21, U:L.23, U:G.24
XAT.287: 17 residues within 4Å:- Chain V: F.26, D.27, P.28, L.29, G.55, G.58, I.59, W.76, M.168, L.169, V.171, L.172
- Ligands: CLA.274, CLA.275, CLA.276, CHL.277, CHL.278
7 PLIP interactions:7 interactions with chain V- Hydrophobic interactions: V:F.26, V:L.29, V:I.59, V:I.59, V:V.171, V:L.172
- Hydrogen bonds: V:L.29
XAT.306: 10 residues within 4Å:- Chain T: L.31, F.41
- Chain W: L.62, L.72, W.108, F.205, A.209
- Ligands: CLA.292, CLA.293, CHL.297
5 PLIP interactions:5 interactions with chain W- Hydrophobic interactions: W:L.62, W:L.72, W:W.108, W:F.205, W:F.205
XAT.326: 12 residues within 4Å:- Chain X: W.124
- Chain Y: A.217, W.218, Y.220, A.221, F.224
- Ligands: CHL.315, CHL.317, CHL.328, CLA.338, CLA.340, LHG.345
3 PLIP interactions:1 interactions with chain X, 2 interactions with chain Y- Hydrophobic interactions: X:W.124, Y:W.218
- Hydrogen bonds: Y:Y.220
XAT.362: 16 residues within 4Å:- Chain N: L.10, S.11, G.14, F.15, I.18
- Chain Y: W.124
- Chain Z: A.217, W.218, Y.220, A.221
- Ligands: CHL.334, CHL.346, CLA.356, CLA.358, CLA.359, LHG.364
6 PLIP interactions:4 interactions with chain Z, 2 interactions with chain N- Hydrophobic interactions: Z:A.217, Z:W.218, Z:W.218, N:F.15
- Hydrogen bonds: Z:Y.220, N:G.14
- 3 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
NEX.307: 10 residues within 4Å:- Chain U: L.25, I.35
- Chain W: W.82, Y.123, L.145, M.146, L.148
- Ligands: CLA.294, CHL.296, CHL.298
6 PLIP interactions:5 interactions with chain W, 1 interactions with chain U- Hydrophobic interactions: W:W.82, W:L.145, W:L.145, W:L.148, U:L.25
- Hydrogen bonds: W:Y.123
NEX.344: 14 residues within 4Å:- Chain K: L.37
- Chain Y: W.67, Y.108, L.130, A.133, V.134, Y.137, P.143
- Ligands: CLA.127, CLA.138, LMU.327, CLA.331, CHL.333, CHL.335
6 PLIP interactions:5 interactions with chain Y, 1 interactions with chain K- Hydrophobic interactions: Y:W.67, Y:L.130, Y:A.133, Y:V.134, Y:P.143, K:L.37
NEX.363: 6 residues within 4Å:- Chain Z: W.67, L.130, V.134, P.143
- Ligands: CLA.349, CHL.351
3 PLIP interactions:3 interactions with chain Z- Hydrophobic interactions: Z:W.67, Z:L.130, Z:P.143
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S. et al., Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens. Nat.Plants (2023)
- Release Date
- 2023-04-26
- Peptides
- Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Predicted protein PsaD: D
PsaE: E
PSI-F: F
PSI-G: G
PsaH photosystem I reaction center subunit: H
Photosystem I reaction center subunit VIII: I
Photosystem I reaction center subunit IX: J
PsaK: K
PSI subunit V: L
Photosystem I reaction center subunit XII: M
PsaO: N
Chlorophyll a-b binding protein, chloroplastic: OS
Chlorophyll a-b binding protein, chloroplastic: PT
Chlorophyll a-b binding protein, chloroplastic: QU
Chlorophyll a-b binding protein, chloroplastic: RV
Chlorophyll a-b binding protein, chloroplastic: W
Chlorophyll a-b binding protein, chloroplastic: XYZ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
OO
1S
5P
2T
6Q
3U
7R
4V
8W
9X
aY
bZ
c - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-1-3-mer
- Ligands
- 221 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
- 2 x PQN: PHYLLOQUINONE(Non-covalent)
- 15 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
- 33 x BCR: BETA-CAROTENE(Non-covalent)
- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 5 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)
- 1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
- 4 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
- 50 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
- 16 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- 11 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
- 3 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, S. et al., Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens. Nat.Plants (2023)
- Release Date
- 2023-04-26
- Peptides
- Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Predicted protein PsaD: D
PsaE: E
PSI-F: F
PSI-G: G
PsaH photosystem I reaction center subunit: H
Photosystem I reaction center subunit VIII: I
Photosystem I reaction center subunit IX: J
PsaK: K
PSI subunit V: L
Photosystem I reaction center subunit XII: M
PsaO: N
Chlorophyll a-b binding protein, chloroplastic: OS
Chlorophyll a-b binding protein, chloroplastic: PT
Chlorophyll a-b binding protein, chloroplastic: QU
Chlorophyll a-b binding protein, chloroplastic: RV
Chlorophyll a-b binding protein, chloroplastic: W
Chlorophyll a-b binding protein, chloroplastic: XYZ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
OO
1S
5P
2T
6Q
3U
7R
4V
8W
9X
aY
bZ
c - Membrane
-
We predict this structure to be a membrane protein.