SMTL ID : 7xx5.1

Crystal Structure of Nucleosome-H1.3 Linker Histone Assembly (sticky-169a DNA fragment)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-4-4-4-4-1-mer

Ligands

13 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain G: E.64, E.67 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.67 CA.2: 4 residues within 4Å: Chain I: G.31, C.32 Chain J: G.133, G.134 No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain I: G.133, G.134 Chain J: G.31 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain I: G.49 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain J: G.80, G.81 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain Q: E.94 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain Q: N.92 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:N.92 CA.8: 1 residues within 4Å: Chain Q: G.25 No protein-ligand interaction detected (PLIP) CA.9: 3 residues within 4Å: Chain S: G.134 Chain T: G.31, C.32 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain S: G.42, G.43 No protein-ligand interaction detected (PLIP) CA.11: 3 residues within 4Å: Chain S: G.31, C.32 Chain T: G.134 No protein-ligand interaction detected (PLIP) CA.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhireksan, Z. et al., Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment). To Be Published

Release Date

2023-05-31

Peptides

Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1.3: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

K
K

O
O

B
B

F
F

L
L

P
P

C
C

G
G

M
M

Q
Q

D
D

H
H

N
N

R
R

U
U

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

Histone H1.3

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