SMTL ID : 7ybo.1

Crystal structure of FGFR4 kinase domain with 10z

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x IH7: ~{N}-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-6-bromanyl-5-(hydroxymethyl)-1-(2-morpholin-4-ylethyl)pyrrolo[3,2-b]pyridine-3-carboxamide(Covalent)

IH7.1: 17 residues within 4Å: Chain A: L.31, G.32, V.39, R.41, T.57, A.59, V.108, E.109, C.110, A.111, A.112, G.114, N.115, R.174, L.177, D.188 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:L.177 Hydrogen bonds: A:A.111, A:N.115 Halogen bonds: A:D.188

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.41 Ligands: IH7.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.41 SO4.3: 3 residues within 4Å: Chain A: R.121, R.124, G.245 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.124, A:R.124 Salt bridges: A:R.121, A:R.124 SO4.4: 4 residues within 4Å: Chain A: R.174, N.175, T.204, R.208 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.204, A:T.204 Water bridges: A:N.175 Salt bridges: A:R.174, A:R.208 SO4.5: 4 residues within 4Å: Chain A: A.192, R.193, G.194, V.195 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.193, A:G.194, A:V.195 SO4.6: 2 residues within 4Å: Chain A: R.22, L.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.25 SO4.7: 1 residues within 4Å: Chain A: H.197 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.197, A:H.197 Salt bridges: A:H.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Design, Synthesis, and Biological Evaluation of 5-Formyl-pyrrolo[3,2- b ]pyridine-3-carboxamides as New Selective, Potent, and Reversible-Covalent FGFR4 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-11-16

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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