SMTL ID : 7yc3.1

Crystal structure of FGFR4 kinase domain with 10t

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x IIW: 6-bromanyl-~{N}-[5-cyano-4-(2-methoxyethylamino)pyridin-2-yl]-5-methanoyl-1-(2-morpholin-4-ylethyl)pyrrolo[3,2-b]pyridine-3-carboxamide(Covalent)

IIW.1: 17 residues within 4Å: Chain A: L.31, V.39, R.41, A.59, K.61, I.92, V.108, E.109, C.110, A.111, A.112, G.114, R.174, N.175, L.177, D.188 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31 Hydrogen bonds: A:K.61, A:A.111, A:A.111 Water bridges: A:R.174, A:D.188

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.174, T.204, N.206, R.208 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.204, A:T.204, A:N.206, A:N.206 Water bridges: A:N.115, A:R.174, A:R.174 Salt bridges: A:R.174 SO4.3: 2 residues within 4Å: Chain A: R.41 Ligands: IIW.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.41, A:R.41 Salt bridges: A:R.41 SO4.4: 4 residues within 4Å: Chain A: R.121, R.124, G.245, S.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246 Water bridges: A:R.124, A:R.124 Salt bridges: A:R.121, A:R.124

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: K.113, E.180, D.181, N.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.113, A:K.113, A:D.181, A:D.181 GOL.6: 2 residues within 4Å: Chain A: E.118, R.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.118, A:R.121 GOL.7: 3 residues within 4Å: Chain A: L.17, W.18, M.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Design, Synthesis, and Biological Evaluation of 5-Formyl-pyrrolo[3,2- b ]pyridine-3-carboxamides as New Selective, Potent, and Reversible-Covalent FGFR4 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-11-16

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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