SMTL ID : 7yh6.1

Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-8

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: F.6, F.10, N.11 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moriyama, S. et al., Structural delineation of SARS-CoV-2 broadly neutralizing antibody to Omicron subvariants. To Be Published

Release Date

2023-07-19

Peptides

NIV-8 Fab light chain: A
NIV-8 Fab heavy chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

NIV-8 Fab light chain

NIV-8 Fab heavy chain

Spike protein S1

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