- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 212 x CL7: CHLOROPHYLL D(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.2: 26 residues within 4Å:- Chain A: L.41, A.44, V.45, F.48, Y.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, L.174, G.175, I.176, T.179, P.279, I.283
- Chain D: L.208, A.211, I.212, W.252, F.256
- Ligands: CL7.1, CL7.6, PL9.60, LHG.62
15 PLIP interactions:13 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:Y.119, A:Y.119, A:Y.147, A:P.150, A:F.158, A:L.174, A:I.283, D:A.211, D:I.212
- Hydrogen bonds: A:Y.126, A:Q.130, A:Y.147
PHO.61: 25 residues within 4Å:- Chain A: L.206, L.210, M.214
- Chain D: L.36, A.40, S.43, I.44, W.47, G.120, L.121, F.124, Q.128, N.141, A.144, F.145, P.148, Y.152, W.172, G.173, V.174, I.203, P.274, L.278
- Ligands: CL7.55, CL7.57
19 PLIP interactions:18 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:L.36, D:A.40, D:I.44, D:F.124, D:F.124, D:A.144, D:P.148, D:Y.152, D:W.172, D:W.172, D:V.174, D:I.203, D:P.274, D:L.278, A:L.206
- Hydrogen bonds: D:Q.128, D:N.141
- pi-Stacking: D:F.145, D:F.145
PHO.160: 26 residues within 4Å:- Chain U: L.41, A.44, V.45, F.48, Y.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, L.174, G.175, I.176, T.179, P.279, I.283
- Chain X: L.208, A.211, I.212, W.252, F.256
- Ligands: CL7.159, CL7.163, PL9.216, LHG.218
15 PLIP interactions:13 interactions with chain U, 2 interactions with chain X- Hydrophobic interactions: U:L.41, U:A.44, U:F.48, U:Y.119, U:Y.119, U:Y.147, U:P.150, U:F.158, U:L.174, U:I.283, X:A.211, X:I.212
- Hydrogen bonds: U:Y.126, U:Q.130, U:Y.147
PHO.217: 25 residues within 4Å:- Chain U: L.206, L.210, M.214
- Chain X: L.36, A.40, S.43, I.44, W.47, G.120, L.121, F.124, Q.128, N.141, A.144, F.145, P.148, Y.152, W.172, G.173, V.174, I.203, P.274, L.278
- Ligands: CL7.211, CL7.213
19 PLIP interactions:18 interactions with chain X, 1 interactions with chain U- Hydrophobic interactions: X:L.36, X:A.40, X:I.44, X:F.124, X:F.124, X:A.144, X:P.148, X:Y.152, X:W.172, X:W.172, X:V.174, X:I.203, X:P.274, X:L.278, U:L.206
- Hydrogen bonds: X:Q.128, X:N.141
- pi-Stacking: X:F.145, X:F.145
- 22 x 8CT: (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene(Non-covalent)
8CT.4: 11 residues within 4Å:- Chain A: V.35, L.42, T.43, I.50, A.51, G.54, L.102, L.106, P.111
- Chain H: W.11
- Ligands: CL7.3
9 PLIP interactions:1 interactions with chain H, 8 interactions with chain A- Hydrophobic interactions: H:W.11, A:V.35, A:T.43, A:I.50, A:A.51, A:L.102, A:L.106, A:L.106, A:P.111
8CT.24: 13 residues within 4Å:- Chain B: M.25, L.29, A.119, V.120, W.123
- Chain K: L.13
- Ligands: CL7.14, CL7.20, CL7.21, 8CT.25, SQD.27, LMG.28, 8CT.34
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain K- Hydrophobic interactions: B:M.25, B:L.29, B:L.29, B:V.120, B:W.123, B:W.123, B:W.123, K:L.13
8CT.25: 13 residues within 4Å:- Chain B: L.29, G.32, W.33, S.36, I.109, G.113
- Ligands: CL7.14, CL7.18, CL7.20, 8CT.24, SQD.27, LMG.28, 8CT.34
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.109
8CT.26: 10 residues within 4Å:- Chain 5: F.22
- Chain B: L.114, F.115, L.117, V.120, W.121, I.124
- Ligands: CL7.11, CL7.12, CL7.23
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain 5- Hydrophobic interactions: B:F.115, B:L.117, B:V.120, B:I.124, 5:F.22, 5:F.22
8CT.34: 15 residues within 4Å:- Chain 5: A.11, I.14, G.15, F.17, F.18
- Chain B: W.33, S.36, M.37, Y.40, F.116
- Ligands: CL7.14, 8CT.24, 8CT.25, SQD.27, SQD.33
7 PLIP interactions:5 interactions with chain 5, 2 interactions with chain B- Hydrophobic interactions: 5:A.11, 5:I.14, 5:F.17, 5:F.18, 5:F.18, B:Y.40, B:F.116
8CT.49: 14 residues within 4Å:- Chain C: Y.121, V.125, I.132, A.133, V.136, L.137, W.159
- Chain I: F.14
- Chain O: L.51, A.54, A.55, S.58
- Ligands: CL7.48, 8CT.53
8 PLIP interactions:6 interactions with chain C, 1 interactions with chain O, 1 interactions with chain I- Hydrophobic interactions: C:V.125, C:A.133, C:V.136, C:V.136, C:L.137, C:W.159, O:L.51, I:F.14
8CT.50: 15 residues within 4Å:- Chain C: Y.224, I.225, I.236, D.244, G.248, H.249, V.252, A.275, Y.276
- Chain H: F.20, I.24
- Ligands: CL7.36, CL7.40, CL7.41, CL7.42
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: C:Y.224, C:I.225, C:I.225, C:I.236, C:I.236, C:V.252, C:A.275, C:Y.276, C:Y.276, H:F.20, H:I.24
8CT.53: 18 residues within 4Å:- Chain C: A.67, G.70, M.71, L.81, F.124, L.131, S.134, A.135, L.142, T.145
- Chain I: M.24, F.31, L.34
- Chain O: S.16, I.20
- Ligands: CL7.46, 8CT.49, 8CT.65
11 PLIP interactions:7 interactions with chain C, 3 interactions with chain I, 1 interactions with chain O- Hydrophobic interactions: C:A.67, C:L.81, C:F.124, C:L.131, C:A.135, C:L.142, C:T.145, I:F.31, I:F.31, I:L.34, O:I.20
8CT.59: 14 residues within 4Å:- Chain D: F.41, L.42, G.45, G.46, F.48, T.49, F.100, W.103, L.109
- Chain F: L.32, L.36, I.39
- Ligands: CL7.58, LMG.63
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain F- Hydrophobic interactions: D:F.41, D:L.42, D:F.48, D:F.48, D:F.48, D:F.48, D:F.100, D:W.103, D:L.109, F:L.32, F:I.39
8CT.65: 15 residues within 4Å:- Chain C: F.74
- Chain I: M.24, I.27, F.30, F.31, A.33, L.34, F.36, V.37
- Chain N: V.21, G.25, P.26
- Chain O: F.17, I.20
- Ligands: 8CT.53
13 PLIP interactions:8 interactions with chain I, 2 interactions with chain O, 1 interactions with chain C, 2 interactions with chain N- Hydrophobic interactions: I:I.27, I:I.27, I:F.30, I:F.30, I:F.31, I:L.34, I:F.36, I:V.37, O:F.17, O:I.20, C:F.74, N:V.21, N:P.26
8CT.140: 17 residues within 4Å:- Chain G: M.32, F.35, V.36, M.38, I.39, L.42, I.45, L.56
- Chain M: I.3, L.7, F.11
- Chain T: G.321, L.325
- Ligands: CL7.8, CL7.16, CL7.17, LHG.139
9 PLIP interactions:6 interactions with chain G, 1 interactions with chain T, 2 interactions with chain M- Hydrophobic interactions: G:V.36, G:M.38, G:I.39, G:L.42, G:I.45, G:L.56, T:L.325, M:L.7, M:F.11
8CT.162: 11 residues within 4Å:- Chain 1: W.11
- Chain U: V.35, L.42, T.43, I.50, A.51, G.54, L.102, L.106, P.111
- Ligands: CL7.161
9 PLIP interactions:8 interactions with chain U, 1 interactions with chain 1- Hydrophobic interactions: U:V.35, U:T.43, U:I.50, U:A.51, U:L.102, U:L.106, U:L.106, U:P.111, 1:W.11
8CT.165: 15 residues within 4Å:- Chain L: A.11, I.14, G.15, F.17, F.18
- Chain V: W.33, S.36, M.37, Y.40, F.116
- Ligands: SQD.5, CL7.172, 8CT.182, 8CT.183, SQD.185
7 PLIP interactions:5 interactions with chain L, 2 interactions with chain V- Hydrophobic interactions: L:A.11, L:I.14, L:F.17, L:F.18, L:F.18, V:Y.40, V:F.116
8CT.182: 13 residues within 4Å:- Chain 4: L.13
- Chain V: M.25, L.29, A.119, V.120, W.123
- Ligands: 8CT.165, CL7.172, CL7.178, CL7.179, 8CT.183, SQD.185, LMG.186
8 PLIP interactions:7 interactions with chain V, 1 interactions with chain 4- Hydrophobic interactions: V:M.25, V:L.29, V:L.29, V:V.120, V:W.123, V:W.123, V:W.123, 4:L.13
8CT.183: 13 residues within 4Å:- Chain V: L.29, G.32, W.33, S.36, I.109, G.113
- Ligands: 8CT.165, CL7.172, CL7.176, CL7.178, 8CT.182, SQD.185, LMG.186
1 PLIP interactions:1 interactions with chain V- Hydrophobic interactions: V:I.109
8CT.184: 10 residues within 4Å:- Chain L: F.22
- Chain V: L.114, F.115, L.117, V.120, W.121, I.124
- Ligands: CL7.169, CL7.170, CL7.181
6 PLIP interactions:4 interactions with chain V, 2 interactions with chain L- Hydrophobic interactions: V:F.115, V:L.117, V:V.120, V:I.124, L:F.22, L:F.22
8CT.205: 14 residues within 4Å:- Chain 2: F.14
- Chain 8: L.51, A.54, A.55, S.58
- Chain W: Y.121, V.125, I.132, A.133, V.136, L.137, W.159
- Ligands: CL7.204, 8CT.209
8 PLIP interactions:6 interactions with chain W, 1 interactions with chain 8, 1 interactions with chain 2- Hydrophobic interactions: W:V.125, W:A.133, W:V.136, W:V.136, W:L.137, W:W.159, 8:L.51, 2:F.14
8CT.206: 15 residues within 4Å:- Chain 1: F.20, I.24
- Chain W: Y.224, I.225, I.236, D.244, G.248, H.249, V.252, A.275, Y.276
- Ligands: CL7.192, CL7.196, CL7.197, CL7.198
11 PLIP interactions:2 interactions with chain 1, 9 interactions with chain W- Hydrophobic interactions: 1:F.20, 1:I.24, W:Y.224, W:I.225, W:I.225, W:I.236, W:I.236, W:V.252, W:A.275, W:Y.276, W:Y.276
8CT.209: 18 residues within 4Å:- Chain 2: M.24, F.31, L.34
- Chain 8: S.16, I.20
- Chain W: A.67, G.70, M.71, L.81, F.124, L.131, S.134, A.135, L.142, T.145
- Ligands: CL7.202, 8CT.205, 8CT.221
11 PLIP interactions:7 interactions with chain W, 3 interactions with chain 2, 1 interactions with chain 8- Hydrophobic interactions: W:A.67, W:L.81, W:F.124, W:L.131, W:A.135, W:L.142, W:T.145, 2:F.31, 2:F.31, 2:L.34, 8:I.20
8CT.215: 14 residues within 4Å:- Chain X: F.41, L.42, G.45, G.46, F.48, T.49, F.100, W.103, L.109
- Chain Z: L.32, L.36, I.39
- Ligands: CL7.214, LMG.219
11 PLIP interactions:2 interactions with chain Z, 9 interactions with chain X- Hydrophobic interactions: Z:L.32, Z:I.39, X:F.41, X:L.42, X:F.48, X:F.48, X:F.48, X:F.48, X:F.100, X:W.103, X:L.109
8CT.221: 15 residues within 4Å:- Chain 2: M.24, I.27, F.30, F.31, A.33, L.34, F.36, V.37
- Chain 7: V.21, G.25, P.26
- Chain 8: F.17, I.20
- Chain W: F.74
- Ligands: 8CT.209
13 PLIP interactions:8 interactions with chain 2, 2 interactions with chain 8, 2 interactions with chain 7, 1 interactions with chain W- Hydrophobic interactions: 2:I.27, 2:I.27, 2:F.30, 2:F.30, 2:F.31, 2:L.34, 2:F.36, 2:V.37, 8:F.17, 8:I.20, 7:V.21, 7:P.26, W:F.74
8CT.294: 17 residues within 4Å:- Chain 0: M.32, F.35, V.36, M.38, I.39, L.42, I.45, L.56
- Chain 6: I.3, L.7, F.11
- Ligands: CL7.166, CL7.174, CL7.175, LHG.293
- Chain d: G.321, L.325
9 PLIP interactions:6 interactions with chain 0, 2 interactions with chain 6, 1 interactions with chain d- Hydrophobic interactions: 0:V.36, 0:M.38, 0:I.39, 0:L.42, 0:I.45, 0:L.56, 6:L.7, 6:F.11, d:L.325
- 14 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.5: 11 residues within 4Å:- Chain A: N.25, N.26, R.27, L.28, I.30, I.38
- Chain V: L.117, W.121
- Ligands: LHG.62, 8CT.165, CL7.181
9 PLIP interactions:2 interactions with chain V, 6 interactions with chain A, 1 interactions with chain 0- Hydrophobic interactions: V:L.117, A:L.28, A:L.28, A:I.30, A:I.38
- Hydrogen bonds: V:W.121, A:R.27, A:L.28
- Salt bridges: 0:K.3
SQD.27: 14 residues within 4Å:- Chain 3: R.15, L.18, L.22
- Chain 4: Y.26
- Chain 5: C.12, F.19, F.23
- Chain B: R.18
- Chain J: N.5, K.8
- Ligands: CL7.21, 8CT.24, 8CT.25, 8CT.34
10 PLIP interactions:5 interactions with chain 3, 1 interactions with chain 4, 1 interactions with chain B, 1 interactions with chain 5, 2 interactions with chain J- Hydrophobic interactions: 3:L.18, 3:L.22, 5:F.19
- Hydrogen bonds: 3:R.15, 3:R.15, 4:Y.26, J:K.8
- Salt bridges: 3:R.15, B:R.18, J:K.8
SQD.33: 11 residues within 4Å:- Chain B: L.117, W.121
- Chain U: N.25, N.26, R.27, L.28, I.30, I.38
- Ligands: CL7.23, 8CT.34, LHG.218
9 PLIP interactions:6 interactions with chain U, 1 interactions with chain G, 2 interactions with chain B- Hydrophobic interactions: U:L.28, U:L.28, U:I.30, U:I.38, B:L.117
- Hydrogen bonds: U:R.27, U:L.28, B:W.121
- Salt bridges: G:K.3
SQD.87: 17 residues within 4Å:- Chain P: Y.4, V.9, E.10, Y.11, G.12, W.14, S.15, Y.317, R.328, F.334, R.335
- Chain Q: X.37
- Ligands: CL7.73, CL7.81, ZEX.84, SQD.89, CL7.279
7 PLIP interactions:7 interactions with chain P- Hydrogen bonds: P:E.10, P:G.12, P:W.14, P:S.15
- Salt bridges: P:R.328, P:R.328, P:R.335
SQD.89: 12 residues within 4Å:- Chain P: N.283, L.284, G.285, F.286, L.287, N.289, Y.317
- Chain Q: X.4
- Ligands: CL7.82, ZEX.84, SQD.87
- Chain c: R.52
5 PLIP interactions:4 interactions with chain P, 1 interactions with chain c- Hydrophobic interactions: P:F.286
- Hydrogen bonds: P:N.283, P:G.285, P:N.289
- Salt bridges: c:R.52
SQD.113: 9 residues within 4Å:- Chain C: L.265
- Chain R: Y.330, K.334, F.340, E.341, I.343
- Ligands: LMG.91, CL7.99, CL7.107
4 PLIP interactions:3 interactions with chain R, 1 interactions with chain C- Hydrogen bonds: R:F.340, R:E.341
- Salt bridges: R:K.334
- Hydrophobic interactions: C:L.265
SQD.134: 14 residues within 4Å:- Chain S: Y.4, V.9, E.10, Y.11, G.12, W.14, F.324, R.328, F.334, R.335, P.338
- Ligands: CL7.121, CL7.129, CL7.151
9 PLIP interactions:9 interactions with chain S- Hydrophobic interactions: S:F.324, S:R.335, S:P.338
- Hydrogen bonds: S:G.12, S:W.14
- Salt bridges: S:R.328, S:R.335, S:R.335, S:R.335
SQD.136: 13 residues within 4Å:- Chain 9: Y.233, R.236
- Chain S: I.102, Y.109, K.113, E.122, F.123
- Ligands: CL7.126, ZEX.135, CL7.226, CL7.227, CL7.236, ZEX.241
3 PLIP interactions:1 interactions with chain 9, 2 interactions with chain S- Hydrophobic interactions: 9:Y.233, S:I.102
- Hydrogen bonds: S:Y.109
SQD.185: 14 residues within 4Å:- Chain 3: N.5, K.8
- Chain J: R.15, L.18, L.22
- Chain K: Y.26
- Chain L: C.12, F.19, F.23
- Chain V: R.18
- Ligands: 8CT.165, CL7.179, 8CT.182, 8CT.183
10 PLIP interactions:5 interactions with chain J, 1 interactions with chain V, 1 interactions with chain K, 2 interactions with chain 3, 1 interactions with chain L- Hydrophobic interactions: J:L.18, J:L.22, L:F.19
- Hydrogen bonds: J:R.15, J:R.15, K:Y.26, 3:K.8
- Salt bridges: J:R.15, V:R.18, 3:K.8
SQD.242: 17 residues within 4Å:- Chain 9: Y.4, V.9, E.10, Y.11, G.12, W.14, S.15, Y.317, R.328, F.334, R.335
- Ligands: CL7.124, CL7.229, CL7.237, ZEX.240, SQD.244
- Chain a: X.37
7 PLIP interactions:7 interactions with chain 9- Hydrogen bonds: 9:E.10, 9:G.12, 9:W.14, 9:S.15
- Salt bridges: 9:R.328, 9:R.328, 9:R.335
SQD.244: 12 residues within 4Å:- Chain 9: N.283, L.284, G.285, F.286, L.287, N.289, Y.317
- Chain S: R.52
- Ligands: CL7.238, ZEX.240, SQD.242
- Chain a: X.4
5 PLIP interactions:4 interactions with chain 9, 1 interactions with chain S- Hydrophobic interactions: 9:F.286
- Hydrogen bonds: 9:N.283, 9:G.285, 9:N.289
- Salt bridges: S:R.52
SQD.268: 9 residues within 4Å:- Chain W: L.265
- Ligands: LMG.246, CL7.254, CL7.262
- Chain b: Y.330, K.334, F.340, E.341, I.343
4 PLIP interactions:3 interactions with chain b, 1 interactions with chain W- Hydrogen bonds: b:F.340, b:E.341
- Salt bridges: b:K.334
- Hydrophobic interactions: W:L.265
SQD.289: 14 residues within 4Å:- Ligands: CL7.276, CL7.284, CL7.305
- Chain c: Y.4, V.9, E.10, Y.11, G.12, W.14, F.324, R.328, F.334, R.335, P.338
9 PLIP interactions:9 interactions with chain c- Hydrophobic interactions: c:F.324, c:R.335, c:P.338
- Hydrogen bonds: c:G.12, c:W.14
- Salt bridges: c:R.328, c:R.335, c:R.335, c:R.335
SQD.291: 13 residues within 4Å:- Chain P: Y.233, R.236
- Ligands: CL7.70, CL7.71, CL7.80, ZEX.86, CL7.281, ZEX.290
- Chain c: I.102, Y.109, K.113, E.122, F.123
3 PLIP interactions:2 interactions with chain c, 1 interactions with chain P- Hydrophobic interactions: c:I.102, P:Y.233
- Hydrogen bonds: c:Y.109
- 12 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.7: 14 residues within 4Å:- Chain A: R.140, W.142, V.145, A.146, F.273, V.281, W.284
- Chain C: W.48, W.455, K.469
- Chain D: E.218, N.219
- Ligands: CL7.43, CL7.45
12 PLIP interactions:3 interactions with chain C, 8 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: C:W.48, A:V.145, A:A.146, A:F.273, A:V.281, A:W.284, A:W.284
- Hydrogen bonds: C:K.469, C:K.469, A:R.140, D:N.219
- Salt bridges: A:R.140
LHG.30: 18 residues within 4Å:- Chain B: W.5, Y.6, R.7, F.464, W.468
- Chain D: Y.140, V.143, M.198, R.264, W.265, F.268, F.272, V.275, T.276
- Ligands: CL7.18, CL7.20, LHG.32, PL9.60
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:F.272, D:V.275, D:T.276, B:W.5
- Hydrogen bonds: D:Y.140, D:R.264, D:R.264
- Salt bridges: B:R.7
LHG.32: 24 residues within 4Å:- Chain B: P.4, W.5, Y.6
- Chain D: R.264, W.265, F.269, F.272
- Chain J: E.12, L.13, N.14, S.17, I.20, G.21, L.23, L.24, V.27
- Chain K: I.17, F.21
- Ligands: CL7.6, CL7.18, CL7.21, LHG.30, PL9.60, LHG.62
16 PLIP interactions:5 interactions with chain D, 2 interactions with chain K, 2 interactions with chain B, 7 interactions with chain J- Hydrophobic interactions: D:W.265, D:F.269, D:F.272, D:F.272, K:I.17, K:F.21, J:L.23, J:L.24, J:V.27, J:V.27
- Hydrogen bonds: D:R.264, B:W.5, B:Y.6, J:N.14, J:N.14, J:S.17
LHG.62: 23 residues within 4Å:- Chain D: I.255, F.256, I.258, A.259, F.260, S.261, N.262, W.265
- Chain J: N.14, A.16, S.17, F.19, I.20
- Chain L: I.13, F.17, A.20, V.21
- Ligands: CL7.1, PHO.2, SQD.5, CL7.6, LHG.32, PL9.60
13 PLIP interactions:4 interactions with chain J, 3 interactions with chain L, 6 interactions with chain D- Hydrophobic interactions: J:F.19, J:I.20, L:I.13, L:F.17, L:V.21, D:F.256, D:I.258, D:F.260
- Hydrogen bonds: J:N.14, J:S.17, D:S.261, D:S.261, D:N.262
LHG.137: 8 residues within 4Å:- Chain B: F.223
- Chain S: R.336, R.339, A.340, S.343, L.344
- Chain T: W.31
- Ligands: CL7.151
5 PLIP interactions:3 interactions with chain S, 1 interactions with chain T, 1 interactions with chain B- Hydrogen bonds: S:R.336, S:S.343, T:R.37
- Salt bridges: S:R.336
- Hydrophobic interactions: B:F.223
LHG.139: 11 residues within 4Å:- Chain T: I.83, H.87, I.303, H.315, R.319, A.322, L.325, Q.326
- Ligands: CL7.8, 8CT.140, CL7.143
3 PLIP interactions:3 interactions with chain T- Hydrophobic interactions: T:L.325
- Hydrogen bonds: T:Q.326
- Salt bridges: T:H.87
LHG.164: 14 residues within 4Å:- Chain U: R.140, W.142, V.145, A.146, F.273, V.281, W.284
- Chain W: W.48, W.455, K.469
- Chain X: E.218, N.219
- Ligands: CL7.199, CL7.201
12 PLIP interactions:8 interactions with chain U, 3 interactions with chain W, 1 interactions with chain X- Hydrophobic interactions: U:V.145, U:A.146, U:F.273, U:V.281, U:W.284, U:W.284, W:W.48
- Hydrogen bonds: U:R.140, W:K.469, W:K.469, X:N.219
- Salt bridges: U:R.140
LHG.188: 18 residues within 4Å:- Chain V: W.5, Y.6, R.7, F.464, W.468
- Chain X: Y.140, V.143, M.198, R.264, W.265, F.268, F.272, V.275, T.276
- Ligands: CL7.176, CL7.178, LHG.190, PL9.216
8 PLIP interactions:6 interactions with chain X, 2 interactions with chain V- Hydrophobic interactions: X:F.272, X:V.275, X:T.276, V:W.5
- Hydrogen bonds: X:Y.140, X:R.264, X:R.264
- Salt bridges: V:R.7
LHG.190: 24 residues within 4Å:- Chain 3: E.12, L.13, N.14, S.17, I.20, G.21, L.23, L.24, V.27
- Chain 4: I.17, F.21
- Chain V: P.4, W.5, Y.6
- Chain X: R.264, W.265, F.269, F.272
- Ligands: CL7.163, CL7.176, CL7.179, LHG.188, PL9.216, LHG.218
16 PLIP interactions:7 interactions with chain 3, 5 interactions with chain X, 2 interactions with chain 4, 2 interactions with chain V- Hydrophobic interactions: 3:L.23, 3:L.24, 3:V.27, 3:V.27, X:W.265, X:F.269, X:F.272, X:F.272, 4:I.17, 4:F.21
- Hydrogen bonds: 3:N.14, 3:N.14, 3:S.17, X:R.264, V:W.5, V:Y.6
LHG.218: 23 residues within 4Å:- Chain 3: N.14, A.16, S.17, F.19, I.20
- Chain 5: I.13, F.17, A.20, V.21
- Chain X: I.255, F.256, I.258, A.259, F.260, S.261, N.262, W.265
- Ligands: SQD.33, CL7.159, PHO.160, CL7.163, LHG.190, PL9.216
13 PLIP interactions:4 interactions with chain 3, 6 interactions with chain X, 3 interactions with chain 5- Hydrophobic interactions: 3:F.19, 3:I.20, X:F.256, X:I.258, X:F.260, 5:I.13, 5:F.17, 5:V.21
- Hydrogen bonds: 3:N.14, 3:S.17, X:S.261, X:S.261, X:N.262
LHG.292: 8 residues within 4Å:- Chain V: F.223
- Ligands: CL7.305
- Chain c: R.336, R.339, A.340, S.343, L.344
- Chain d: W.31
5 PLIP interactions:1 interactions with chain V, 3 interactions with chain c, 1 interactions with chain d- Hydrophobic interactions: V:F.223
- Hydrogen bonds: c:R.336, c:S.343, d:R.37
- Salt bridges: c:R.336
LHG.293: 11 residues within 4Å:- Ligands: CL7.166, 8CT.294, CL7.297
- Chain d: I.83, H.87, I.303, H.315, R.319, A.322, L.325, Q.326
3 PLIP interactions:3 interactions with chain d- Hydrophobic interactions: d:L.325
- Hydrogen bonds: d:Q.326
- Salt bridges: d:H.87
- 8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.28: 17 residues within 4Å:- Chain B: Y.40, K.44, T.327, G.328, S.332, Y.458
- Chain D: I.283
- Chain J: F.36
- Chain K: N.4, L.6, A.10, F.14
- Ligands: CL7.14, CL7.18, CL7.20, 8CT.24, 8CT.25
10 PLIP interactions:3 interactions with chain K, 6 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: K:A.10, K:F.14, B:Y.458, D:I.283
- Hydrogen bonds: K:N.4, B:Y.40, B:K.44, B:T.327, B:T.327, B:S.332
LMG.35: 22 residues within 4Å:- Chain A: L.36, L.93, P.95, W.97, E.98, I.121
- Chain C: T.226, S.228, P.229, W.230, E.232, W.235, Y.292, M.296, I.297
- Chain H: K.5, Y.9, F.19, F.20
- Ligands: CL7.3, CL7.40, DGD.51
15 PLIP interactions:5 interactions with chain H, 6 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: H:F.19, H:F.20, H:F.20, C:P.229, C:W.235, C:M.296, C:I.297, A:L.36, A:I.121
- Hydrogen bonds: H:K.5, H:Y.9, C:S.228, C:S.228, A:W.97, A:E.98
LMG.63: 7 residues within 4Å:- Chain D: Y.66, G.69, A.70, F.72
- Chain F: I.39, Q.43
- Ligands: 8CT.59
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:G.69, D:F.72, F:Q.43
LMG.91: 13 residues within 4Å:- Chain C: W.216, V.254
- Chain P: R.52
- Chain R: F.290, G.291, I.292, A.293, Y.295, Y.319, Y.323
- Ligands: CL7.107, ZEX.111, SQD.113
9 PLIP interactions:6 interactions with chain R, 2 interactions with chain P, 1 interactions with chain C- Hydrophobic interactions: R:A.293, R:Y.295, C:V.254
- Hydrogen bonds: R:F.290, R:G.291, R:I.292, R:A.293, P:R.52, P:R.52
LMG.186: 17 residues within 4Å:- Chain 3: F.36
- Chain 4: N.4, L.6, A.10, F.14
- Chain V: Y.40, K.44, T.327, G.328, S.332, Y.458
- Chain X: I.283
- Ligands: CL7.172, CL7.176, CL7.178, 8CT.182, 8CT.183
10 PLIP interactions:6 interactions with chain V, 1 interactions with chain X, 3 interactions with chain 4- Hydrophobic interactions: V:Y.458, X:I.283, 4:A.10, 4:F.14
- Hydrogen bonds: V:Y.40, V:K.44, V:T.327, V:T.327, V:S.332, 4:N.4
LMG.191: 21 residues within 4Å:- Chain 1: K.5, Y.9, F.19, F.20
- Chain U: L.36, L.93, P.95, W.97, E.98, I.121
- Chain W: T.226, S.228, P.229, W.230, E.232, W.235, Y.292, M.296
- Ligands: CL7.161, CL7.196, DGD.207
15 PLIP interactions:5 interactions with chain U, 5 interactions with chain 1, 5 interactions with chain W- Hydrophobic interactions: U:L.36, U:I.121, U:I.121, 1:F.19, 1:F.20, 1:F.20, W:P.229, W:W.235, W:M.296
- Hydrogen bonds: U:W.97, U:E.98, 1:K.5, 1:Y.9, W:S.228, W:S.228
LMG.219: 7 residues within 4Å:- Chain X: Y.66, G.69, A.70, F.72
- Chain Z: I.39, Q.43
- Ligands: 8CT.215
3 PLIP interactions:2 interactions with chain X, 1 interactions with chain Z- Hydrogen bonds: X:G.69, X:F.72, Z:Q.43
LMG.246: 13 residues within 4Å:- Chain 9: R.52
- Chain W: W.216, V.254
- Ligands: CL7.262, ZEX.266, SQD.268
- Chain b: F.290, G.291, I.292, A.293, Y.295, Y.319, Y.323
9 PLIP interactions:6 interactions with chain b, 1 interactions with chain W, 2 interactions with chain 9- Hydrophobic interactions: b:A.293, b:Y.295, W:V.254
- Hydrogen bonds: b:F.290, b:G.291, b:I.292, b:A.293, 9:R.52, 9:R.52
- 4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.31: 23 residues within 4Å:- Chain B: Y.201, F.258, Y.266, Y.281, Q.282, S.285, F.463, W.467
- Chain D: G.85, H.86, L.88, V.118, L.161, G.162, L.290
- Chain G: L.47, Y.50, N.51, H.52, A.61, G.62, W.63
- Ligands: CL7.9
14 PLIP interactions:7 interactions with chain B, 5 interactions with chain G, 2 interactions with chain D- Hydrophobic interactions: B:F.258, B:Y.266, B:F.463, B:W.467, G:L.47, G:Y.50, G:Y.50, D:L.290
- Hydrogen bonds: B:Y.201, B:S.285, B:S.285, G:H.52, G:W.63, D:H.86
DGD.51: 26 residues within 4Å:- Chain A: L.91, A.152, Y.155, L.163
- Chain C: P.229, W.230, G.231, G.233, G.234, V.237, S.238, V.239, Y.292, M.296, G.300, F.304, N.305, N.306, T.307, D.372, F.373, R.374, F.447, F.450
- Ligands: LMG.35, CL7.40
17 PLIP interactions:15 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:W.230, C:W.230, C:F.447, C:F.450, C:F.450, A:Y.155, A:L.163
- Hydrogen bonds: C:W.230, C:N.305, C:N.306, C:N.306, C:T.307, C:T.307, C:D.372, C:D.372, C:R.374, C:R.374
DGD.189: 23 residues within 4Å:- Chain 0: L.47, Y.50, N.51, H.52, A.61, G.62, W.63
- Chain V: Y.201, F.258, Y.266, Y.281, Q.282, S.285, F.463, W.467
- Chain X: G.85, H.86, L.88, V.118, L.161, G.162, L.290
- Ligands: CL7.167
14 PLIP interactions:7 interactions with chain V, 5 interactions with chain 0, 2 interactions with chain X- Hydrophobic interactions: V:F.258, V:Y.266, V:F.463, V:W.467, 0:L.47, 0:Y.50, 0:Y.50, X:L.290
- Hydrogen bonds: V:Y.201, V:S.285, V:S.285, 0:H.52, 0:W.63, X:H.86
DGD.207: 26 residues within 4Å:- Chain U: L.91, A.152, Y.155, L.163
- Chain W: P.229, W.230, G.231, G.233, G.234, V.237, S.238, V.239, Y.292, M.296, G.300, F.304, N.305, N.306, T.307, D.372, F.373, R.374, F.447, F.450
- Ligands: LMG.191, CL7.196
17 PLIP interactions:15 interactions with chain W, 2 interactions with chain U- Hydrophobic interactions: W:W.230, W:W.230, W:F.447, W:F.450, W:F.450, U:Y.155, U:L.163
- Hydrogen bonds: W:W.230, W:N.305, W:N.306, W:N.306, W:T.307, W:T.307, W:D.372, W:D.372, W:R.374, W:R.374
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.54: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.213, H.267
- Ligands: BCT.56
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.215, A:H.272, D:H.213, D:H.267
FE2.210: 5 residues within 4Å:- Chain U: H.215, H.272
- Chain X: H.213, H.267
- Ligands: BCT.212
4 PLIP interactions:2 interactions with chain X, 2 interactions with chain U- Metal complexes: X:H.213, X:H.267, U:H.215, U:H.272
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.56: 5 residues within 4Å:- Chain A: H.272
- Chain D: E.241, Y.243, H.267
- Ligands: FE2.54
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.241, D:Y.243
BCT.212: 5 residues within 4Å:- Chain U: H.272
- Chain X: E.241, Y.243, H.267
- Ligands: FE2.210
2 PLIP interactions:2 interactions with chain X- Hydrogen bonds: X:E.241, X:Y.243
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.60: 32 residues within 4Å:- Chain A: F.48, V.49, F.52, I.77, I.176
- Chain D: M.197, M.198, A.201, G.202, I.212, H.213, T.216, Y.243, M.245, A.248, W.252, F.256, A.259, F.260, L.266, F.269, V.273
- Chain J: L.24, V.27, L.30, L.31
- Chain L: L.10
- Ligands: PHO.2, CL7.6, LHG.30, LHG.32, LHG.62
23 PLIP interactions:4 interactions with chain A, 4 interactions with chain J, 13 interactions with chain D, 2 interactions with chain L- Hydrophobic interactions: A:V.49, A:F.52, A:I.77, A:I.176, J:L.24, J:V.27, J:L.30, J:L.31, D:I.212, D:T.216, D:Y.243, D:A.248, D:W.252, D:F.256, D:F.260, D:F.260, D:L.266, D:F.269, D:V.273, L:L.10, L:L.10
- Hydrogen bonds: D:H.213, D:F.260
PL9.216: 32 residues within 4Å:- Chain 3: L.24, V.27, L.30, L.31
- Chain 5: L.10
- Chain U: F.48, V.49, F.52, I.77, I.176
- Chain X: M.197, M.198, A.201, G.202, I.212, H.213, T.216, Y.243, M.245, A.248, W.252, F.256, A.259, F.260, L.266, F.269, V.273
- Ligands: PHO.160, CL7.163, LHG.188, LHG.190, LHG.218
23 PLIP interactions:13 interactions with chain X, 4 interactions with chain 3, 2 interactions with chain 5, 4 interactions with chain U- Hydrophobic interactions: X:I.212, X:T.216, X:Y.243, X:A.248, X:W.252, X:F.256, X:F.260, X:F.260, X:L.266, X:F.269, X:V.273, 3:L.24, 3:V.27, 3:L.30, 3:L.31, 5:L.10, 5:L.10, U:V.49, U:F.52, U:I.77, U:I.176
- Hydrogen bonds: X:H.213, X:F.260
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.64: 13 residues within 4Å:- Chain E: R.18, Y.19, I.22, H.23, T.26, L.30
- Chain F: I.17, R.21, W.22, V.25, H.26, G.29, V.33
10 PLIP interactions:5 interactions with chain F, 5 interactions with chain E,- Hydrophobic interactions: F:V.25, F:V.33, E:Y.19, E:I.22, E:T.26, E:L.30
- Salt bridges: F:R.21, E:R.18
- pi-Stacking: F:W.22
- Metal complexes: F:H.26
HEM.220: 13 residues within 4Å:- Chain Y: R.18, Y.19, I.22, H.23, T.26, L.30
- Chain Z: I.17, R.21, W.22, V.25, H.26, G.29, V.33
10 PLIP interactions:5 interactions with chain Y, 5 interactions with chain Z,- Hydrophobic interactions: Y:Y.19, Y:I.22, Y:T.26, Y:L.30, Z:V.25, Z:V.33
- Salt bridges: Y:R.18, Z:R.21
- pi-Stacking: Z:W.22
- Metal complexes: Z:H.26
- 28 x ZEX: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol(Non-covalent)(Covalent)
ZEX.84: 12 residues within 4Å:- Chain P: W.14, N.289, F.305, W.306, F.310, F.313, Y.317
- Ligands: CL7.73, CL7.75, CL7.81, SQD.87, SQD.89
10 PLIP interactions:10 interactions with chain P- Hydrophobic interactions: P:F.305, P:F.305, P:W.306, P:F.310, P:F.313, P:F.313, P:F.313, P:Y.317, P:Y.317
- Hydrogen bonds: P:W.14
ZEX.85: 17 residues within 4Å:- Chain P: Y.262, P.288, F.290
- Ligands: CL7.70, CL7.81, CL7.82, CL7.279
- Chain c: A.29, G.33, F.40, L.47, M.94, A.100, A.101, A.107, L.108, V.111
7 PLIP interactions:5 interactions with chain c, 2 interactions with chain P- Hydrophobic interactions: c:F.40, c:A.101, c:A.107, c:L.108, c:V.111, P:Y.262, P:P.288
ZEX.86: 18 residues within 4Å:- Chain P: I.186, Y.189, P.198, V.201, D.206, V.207, G.210, F.213, I.214, I.237, F.238
- Ligands: CL7.66, CL7.70, CL7.71, CL7.72, CL7.80, CL7.281, SQD.291
7 PLIP interactions:7 interactions with chain P- Hydrophobic interactions: P:Y.189, P:V.207, P:F.213, P:I.214, P:I.237, P:F.238
- Hydrogen bonds: P:P.198
ZEX.88: 13 residues within 4Å:- Chain P: Y.87, A.91, M.94, F.98, V.102, F.103, F.129
- Chain R: F.196, F.203, Y.268
- Ligands: CL7.77, CL7.78, CL7.110
11 PLIP interactions:1 interactions with chain R, 10 interactions with chain P- Hydrophobic interactions: R:F.196, P:A.91, P:M.94, P:F.98, P:F.98, P:F.98, P:F.98, P:V.102, P:F.103
- Hydrogen bonds: P:Y.87, P:Y.87
ZEX.90: 19 residues within 4Å:- Chain P: A.29, G.33, S.37, F.40, L.47, M.94, A.100, A.107, I.111
- Chain R: F.264, Y.268, P.294, F.296, Y.318, L.325
- Ligands: CL7.76, CL7.96, CL7.107, CL7.108
9 PLIP interactions:5 interactions with chain R, 4 interactions with chain P- Hydrophobic interactions: R:F.264, R:Y.268, R:P.294, R:Y.318, R:L.325, P:F.40, P:L.47, P:A.107, P:I.111
ZEX.111: 9 residues within 4Å:- Chain R: S.15, F.296, A.311, N.315, I.316, Y.319, Y.323
- Ligands: LMG.91, CL7.99
6 PLIP interactions:6 interactions with chain R- Hydrophobic interactions: R:A.311, R:N.315, R:I.316, R:Y.319, R:Y.323, R:Y.323
ZEX.112: 16 residues within 4Å:- Chain R: V.190, C.202, V.205, D.210, L.211, G.214, H.215, F.217, I.218, V.241, L.261
- Ligands: CL7.78, CL7.92, CL7.96, CL7.98, CL7.106
6 PLIP interactions:6 interactions with chain R- Hydrophobic interactions: R:V.190, R:L.211, R:F.217, R:I.218, R:V.241, R:L.261
ZEX.132: 10 residues within 4Å:- Chain S: W.14, S.15, F.305, N.309, F.310, Y.313, W.314, Y.317
- Ligands: CL7.121, CL7.123
5 PLIP interactions:5 interactions with chain S- Hydrophobic interactions: S:F.305, S:F.310, S:Y.313, S:Y.313, S:W.314
ZEX.133: 15 residues within 4Å:- Chain S: F.186, P.198, D.206, V.207, G.210, H.211, V.214, I.237, F.238
- Ligands: CL7.114, CL7.118, CL7.119, CL7.120, CL7.128, CL7.153
5 PLIP interactions:5 interactions with chain S- Hydrophobic interactions: S:F.186, S:P.198, S:V.207, S:I.237, S:F.238
ZEX.135: 16 residues within 4Å:- Chain 9: F.199, Y.262
- Chain S: Y.87, F.90, M.94, V.98, I.102, L.103, F.129
- Ligands: CL7.125, CL7.126, CL7.127, SQD.136, CL7.227, CL7.236, CL7.239
8 PLIP interactions:2 interactions with chain 9, 6 interactions with chain S- Hydrophobic interactions: 9:F.199, 9:Y.262, S:M.94, S:V.98, S:I.102, S:L.103
- Hydrogen bonds: S:Y.87, S:Y.87
ZEX.138: 17 residues within 4Å:- Chain 9: Y.262, P.288, F.290
- Chain S: A.29, G.33, F.40, L.47, M.94, A.100, A.101, A.107, L.108, V.111
- Ligands: CL7.124, CL7.226, CL7.237, CL7.238
7 PLIP interactions:5 interactions with chain S, 2 interactions with chain 9- Hydrophobic interactions: S:F.40, S:A.101, S:A.107, S:L.108, S:V.111, 9:Y.262, 9:P.288
ZEX.141: 16 residues within 4Å:- Chain S: Y.262, P.288, F.290, Y.312
- Chain T: C.51, L.55, V.58, F.108, F.115, C.122, L.126
- Ligands: CL7.118, CL7.129, CL7.130, CL7.151, ZEX.158
6 PLIP interactions:5 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:L.55, T:L.55, T:V.58, T:F.115, T:L.126, S:P.288
ZEX.156: 8 residues within 4Å:- Chain T: S.300, L.301, R.304, Y.305, A.323, L.327, L.339
- Ligands: CL7.145
7 PLIP interactions:7 interactions with chain T- Hydrophobic interactions: T:R.304, T:A.323, T:L.327, T:L.327, T:L.339
- Hydrogen bonds: T:R.304, T:R.304
ZEX.157: 16 residues within 4Å:- Chain T: L.206, Y.209, M.223, D.231, V.232, G.235, H.236, L.238, I.239, H.263, P.264
- Ligands: CL7.142, CL7.145, CL7.146, CL7.147, CL7.155
4 PLIP interactions:4 interactions with chain T- Hydrophobic interactions: T:Y.209, T:L.238, T:I.239, T:I.239
ZEX.158: 15 residues within 4Å:- Chain S: N.197, Y.199, Y.262
- Chain T: Y.105, V.112, F.116, V.120, F.148, F.168
- Ligands: CL7.128, CL7.131, ZEX.141, CL7.152, CL7.153, CL7.154
7 PLIP interactions:6 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:V.112, T:F.116, T:F.116, T:V.120, T:F.168, S:Y.262
- Hydrogen bonds: T:Y.105
ZEX.240: 12 residues within 4Å:- Chain 9: W.14, N.289, F.305, W.306, F.310, F.313, Y.317
- Ligands: CL7.229, CL7.231, CL7.237, SQD.242, SQD.244
10 PLIP interactions:10 interactions with chain 9- Hydrophobic interactions: 9:F.305, 9:F.305, 9:W.306, 9:F.310, 9:F.313, 9:F.313, 9:F.313, 9:Y.317, 9:Y.317
- Hydrogen bonds: 9:W.14
ZEX.241: 18 residues within 4Å:- Chain 9: I.186, Y.189, P.198, V.201, D.206, V.207, G.210, F.213, I.214, I.237, F.238
- Ligands: CL7.126, SQD.136, CL7.222, CL7.226, CL7.227, CL7.228, CL7.236
7 PLIP interactions:7 interactions with chain 9- Hydrophobic interactions: 9:Y.189, 9:V.207, 9:F.213, 9:I.214, 9:I.237, 9:F.238
- Hydrogen bonds: 9:P.198
ZEX.243: 13 residues within 4Å:- Chain 9: Y.87, A.91, M.94, F.98, V.102, F.103, F.129
- Ligands: CL7.233, CL7.234, CL7.265
- Chain b: F.196, F.203, Y.268
11 PLIP interactions:10 interactions with chain 9, 1 interactions with chain b- Hydrophobic interactions: 9:A.91, 9:M.94, 9:F.98, 9:F.98, 9:F.98, 9:F.98, 9:V.102, 9:F.103, b:F.196
- Hydrogen bonds: 9:Y.87, 9:Y.87
ZEX.245: 19 residues within 4Å:- Chain 9: A.29, G.33, S.37, F.40, L.47, M.94, A.100, A.107, I.111
- Ligands: CL7.232, CL7.251, CL7.262, CL7.263
- Chain b: F.264, Y.268, P.294, F.296, Y.318, L.325
9 PLIP interactions:4 interactions with chain 9, 5 interactions with chain b- Hydrophobic interactions: 9:F.40, 9:L.47, 9:A.107, 9:I.111, b:F.264, b:Y.268, b:P.294, b:Y.318, b:L.325
ZEX.266: 9 residues within 4Å:- Ligands: LMG.246, CL7.254
- Chain b: S.15, F.296, A.311, N.315, I.316, Y.319, Y.323
6 PLIP interactions:6 interactions with chain b- Hydrophobic interactions: b:A.311, b:N.315, b:I.316, b:Y.319, b:Y.323, b:Y.323
ZEX.267: 16 residues within 4Å:- Ligands: CL7.234, CL7.247, CL7.251, CL7.253, CL7.261
- Chain b: V.190, C.202, V.205, D.210, L.211, G.214, H.215, F.217, I.218, V.241, L.261
6 PLIP interactions:6 interactions with chain b- Hydrophobic interactions: b:V.190, b:L.211, b:F.217, b:I.218, b:V.241, b:L.261
ZEX.287: 10 residues within 4Å:- Ligands: CL7.276, CL7.278
- Chain c: W.14, S.15, F.305, N.309, F.310, Y.313, W.314, Y.317
5 PLIP interactions:5 interactions with chain c- Hydrophobic interactions: c:F.305, c:F.310, c:Y.313, c:Y.313, c:W.314
ZEX.288: 15 residues within 4Å:- Ligands: CL7.269, CL7.273, CL7.274, CL7.275, CL7.283, CL7.307
- Chain c: F.186, P.198, D.206, V.207, G.210, H.211, V.214, I.237, F.238
5 PLIP interactions:5 interactions with chain c- Hydrophobic interactions: c:F.186, c:P.198, c:V.207, c:I.237, c:F.238
ZEX.290: 16 residues within 4Å:- Chain P: F.199, Y.262
- Ligands: CL7.71, CL7.80, CL7.83, CL7.280, CL7.281, CL7.282, SQD.291
- Chain c: Y.87, F.90, M.94, V.98, I.102, L.103, F.129
8 PLIP interactions:6 interactions with chain c, 2 interactions with chain P- Hydrophobic interactions: c:M.94, c:V.98, c:I.102, c:L.103, P:F.199, P:Y.262
- Hydrogen bonds: c:Y.87, c:Y.87
ZEX.295: 16 residues within 4Å:- Ligands: CL7.273, CL7.284, CL7.285, CL7.305, ZEX.312
- Chain c: Y.262, P.288, F.290, Y.312
- Chain d: C.51, L.55, V.58, F.108, F.115, C.122, L.126
6 PLIP interactions:5 interactions with chain d, 1 interactions with chain c- Hydrophobic interactions: d:L.55, d:L.55, d:V.58, d:F.115, d:L.126, c:P.288
ZEX.310: 8 residues within 4Å:- Ligands: CL7.299
- Chain d: S.300, L.301, R.304, Y.305, A.323, L.327, L.339
7 PLIP interactions:7 interactions with chain d- Hydrophobic interactions: d:R.304, d:A.323, d:L.327, d:L.327, d:L.339
- Hydrogen bonds: d:R.304, d:R.304
ZEX.311: 16 residues within 4Å:- Ligands: CL7.296, CL7.299, CL7.300, CL7.301, CL7.309
- Chain d: L.206, Y.209, M.223, D.231, V.232, G.235, H.236, L.238, I.239, H.263, P.264
4 PLIP interactions:4 interactions with chain d- Hydrophobic interactions: d:Y.209, d:L.238, d:I.239, d:I.239
ZEX.312: 15 residues within 4Å:- Ligands: CL7.283, CL7.286, ZEX.295, CL7.306, CL7.307, CL7.308
- Chain c: N.197, Y.199, Y.262
- Chain d: Y.105, V.112, F.116, V.120, F.148, F.168
7 PLIP interactions:6 interactions with chain d, 1 interactions with chain c- Hydrophobic interactions: d:V.112, d:F.116, d:F.116, d:V.120, d:F.168, c:Y.262
- Hydrogen bonds: d:Y.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shen, L. et al., Structure of a unique PSII-Pcb tetrameric megacomplex in a chlorophyll d -containing cyanobacterium. Sci Adv (2024)
- Release Date
- 2023-08-16
- Peptides
- Photosystem II protein D1 2: AU
Photosystem II CP47 reaction center protein: BV
Photosystem II CP43 reaction center protein: CW
Photosystem II D2 protein 1: DX
Cytochrome b559 subunit alpha: EY
Photosystem II protein Y: FZ
Photosystem II 10 kDa phosphoprotein PsbH: G0
Photosystem II protein PsbI: H1
Photosystem II reaction center protein K: I2
Photosystem II reaction center protein L: J3
Photosystem II reaction center protein M: K4
Photosystem II reaction center protein T: L5
Photosystem II reaction center X protein: M6
Photosystem II reaction center protein Ycf12: N7
Photosystem II reaction center protein Z: O8
High light inducible protein: P9
Unknown protein: Qa
High light inducible protein: Rb
High light inducible protein: Sc
High light inducible protein: Td - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AU
aB
BV
bC
CW
cD
DX
dE
EY
eF
FZ
fG
H0
hH
I1
iI
K2
kJ
L3
lK
M4
mL
T5
tM
X6
xN
Y7
yO
Z8
zP
29
6Q
Ga
gR
1b
5S
3c
7T
4d
8 - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7ymi.1
PSII-Pcb Dimer of Acaryochloris Marina
Photosystem II protein D1 2
Toggle Identical (AU)Photosystem II CP47 reaction center protein
Toggle Identical (BV)Photosystem II CP43 reaction center protein
Toggle Identical (CW)Photosystem II D2 protein 1
Toggle Identical (DX)Cytochrome b559 subunit alpha
Toggle Identical (EY)Photosystem II protein Y
Toggle Identical (FZ)Photosystem II 10 kDa phosphoprotein PsbH
Toggle Identical (G0)Photosystem II protein PsbI
Toggle Identical (H1)Photosystem II reaction center protein K
Toggle Identical (I2)Photosystem II reaction center protein L
Toggle Identical (J3)Photosystem II reaction center protein M
Toggle Identical (K4)Photosystem II reaction center protein T
Toggle Identical (L5)Photosystem II reaction center X protein
Toggle Identical (M6)Photosystem II reaction center protein Ycf12
Toggle Identical (N7)Photosystem II reaction center protein Z
Toggle Identical (O8)High light inducible protein
Toggle Identical (P9)Unknown protein
Toggle Identical (Qa)High light inducible protein
Toggle Identical (Rb)High light inducible protein
Toggle Identical (Sc)High light inducible protein
Toggle Identical (Td)Related Entries With Identical Sequence
4v7r.25 | 4v7r.84 | 4xgc.1 | 4xwo.1 | 4xwo.2 | 4xwo.3 | 4xwo.4 | 6iaw.1 | 7ar9.1 | 7ard.1 | 7ymm.1 | 7ymm.2 | 7ymm.3 | 7ymm.4 | 7ymm.5 | 7ymm.6 | 7ymm.7 | 7ymm.8 | 7ymm.9 | 7ymm.10 | 7ymm.11 | 7ymm.12 | 7ymm.13 | 7ymm.14 | 7ymm.15 | 7ymm.16 | 7ymm.17 | 7ymm.18 | 7ymm.19 | 7ymm.20 more...less...7ymm.21 | 7ymm.22 | 7ymm.23 | 7ymm.24 | 7ymm.25 | 7ymm.26 | 7ymm.27 | 7ymm.28 | 7ymm.29 | 7ymm.30 | 7ymm.31 | 7ymm.32 | 7ymm.33 | 7ymm.34 | 7ymm.35 | 7ymm.36 | 7ymm.37 | 7ymm.38 | 7ymm.39 | 7ymm.40 | 7ymm.41 | 7ymm.42 | 7ymm.43 | 7ymm.44 | 7ymm.45 | 7ymm.46 | 7ymm.47 | 7ymm.48 | 7ymm.49 | 7ymm.50 | 7ymm.51 | 7ymm.52 | 7ymm.53 | 7ymm.54 | 7ymm.55 | 7ymm.56 | 7ymm.57 | 7ymm.58 | 7ymm.59 | 7ymm.60 | 7ymm.61 | 7ymm.62 | 7ymm.63 | 7ymm.64 | 7ymm.65 | 7ymm.66 | 7ymm.67 | 7ymm.68 | 7ymm.69 | 7ymm.70 | 7ymm.71 | 7ymm.72 | 7ymm.73 | 7ymm.74 | 7ymm.75 | 7ymm.76 | 7ymm.77 | 7ymm.78 | 7ymm.79 | 7ymm.80