SMTL ID : 7yrf.4 (3 other biounits)

Cryo-EM structure of compact CA16 empty particle in complex with a neutralizing antibody 8C4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 11 residues within 4Å: Chain A: I.39, D.40, L.41, F.63, Y.83, V.107, V.120, W.131, N.156, M.158, F.161 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.39, A:I.39, A:L.41, A:F.63, A:F.63, A:Y.83, A:Y.83, A:V.107, A:V.120, A:F.161, A:F.161 Hydrogen bonds: A:D.40, A:L.41, A:N.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Molecular mechanism of antibody neutralization of coxsackievirus A16. Nat Commun (2022)

Release Date

2022-09-14

Peptides

Genome polyprotein: A
Light chain of chain: B
Genome polyprotein: C
The heavy chain of the antibody 8C4: D
Capsid protein VP3: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
B

D
F

E
C

Genome polyprotein

Light chain of chain

Genome polyprotein

The heavy chain of the antibody 8C4

Capsid protein VP3

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