SMTL ID : 7yrh.4 (3 other biounits)

Cryo-EM structure of compact coxsackievirus A16 empty particle in complex with a neutralizing antibody 9B5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 16 residues within 4Å: Chain A: I.111, D.112, L.113, F.131, F.135, F.137, Y.153, Y.155, V.190, V.192, W.203, N.228, M.230, F.233, M.253 Chain C: I.24 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.111, A:I.111, A:L.113, A:L.113, A:F.131, A:F.135, A:F.135, A:F.135, A:F.137, A:Y.153, A:Y.155, A:Y.155, A:V.190, A:V.192 Hydrogen bonds: A:D.112, A:L.113, A:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Molecular mechanism of antibody neutralization of coxsackievirus A16. Nat Commun (2022)

Release Date

2022-09-14

Peptides

Capsid protein VP1: A
Genome polyprotein: B
Capsid protein VP3: C
The light chain of the antibody 9B5: D
The heavy chain of the antibody 9B5: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

Capsid protein VP1

Genome polyprotein

Capsid protein VP3

The light chain of the antibody 9B5

The heavy chain of the antibody 9B5

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