SMTL ID : 7y7m.4 (3 other biounits)

The structure of coxsackievirus A16 mature virion in complex with Fab 8C4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain A: I.111, D.112, L.113, M.114, F.135, F.137, Y.155, V.192, M.195, Y.201, W.203, N.228, M.230, F.233 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.111, A:L.113, A:F.135, A:F.135, A:F.137, A:Y.155, A:Y.155, A:V.192, A:W.203, A:N.228, A:F.233, A:F.233 Hydrogen bonds: A:D.112, A:L.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Molecular mechanism of antibody neutralization of coxsackievirus A16. Nat Commun (2022)

Release Date

2022-08-24

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D
The light chain of fab 8C4: E
The heavy chain of fab 8C4: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
G

F
F

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

The light chain of fab 8C4

The heavy chain of fab 8C4

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