SMTL ID : 7ytq.2 (3 other biounits)

Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.113, N.115, E.121, N.135, D.136 Ligands: JMI.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.113, A:E.121, A:D.136, A:D.136

1 x JMI: ~{N}-[2-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]ethyl]ethanamide(Non-covalent)

JMI.2: 7 residues within 4Å: Chain A: E.113, N.115, E.121, K.127, N.135, D.136 Ligands: CA.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.113, A:N.115, A:N.135 Water bridges: A:K.127, A:K.127 Salt bridges: A:K.127

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Y.36, S.38, L.39, I.40 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand. To Be Published

Release Date

2022-09-07

Peptides

CD207 molecule: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CD207 molecule

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