SMTL ID : 7ytq.4 (3 other biounits)

Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x TRP: TRYPTOPHAN(Non-covalent)

TRP.1: 6 residues within 4Å: Chain A: K.85, G.87, M.88, E.89, G.90, H.122 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:K.85, A:K.85 Hydrogen bonds: A:G.87 Water bridges: A:M.88, A:N.116 pi-Stacking: A:H.122

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.113, N.115, E.121, N.135, D.136 Ligands: JMI.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.113, A:E.121, A:D.136, A:D.136

1 x JMI: ~{N}-[2-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]ethyl]ethanamide(Non-covalent)

JMI.3: 7 residues within 4Å: Chain A: E.113, N.115, E.121, K.127, N.135, D.136 Ligands: CA.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.113, A:N.115, A:E.121, A:N.135 Water bridges: A:K.127, A:N.135 Salt bridges: A:K.127

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: Y.36, S.38, L.39, I.40 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wangkanont, K., Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand. To Be Published

Release Date

2022-09-07

Peptides

CD207 molecule: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

CD207 molecule

Related Entries With Identical Sequence