SMTL ID : 7yuv.1

MtaLon-ADP for the spiral oligomers of tetramer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: H.319, G.321, L.322, V.359, G.360, T.362, S.363, Y.493, I.501, K.509, V.540, R.541, E.544 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.321, A:G.360, A:T.362, A:T.362, A:Y.493, A:Y.493, A:K.509, A:K.509 Salt bridges: A:R.366, A:R.541, A:R.541 ADP.2: 14 residues within 4Å: Chain B: H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, Y.493, I.501, K.509, V.540, R.541 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.320, B:G.360, B:K.361, B:T.362, B:S.363, B:Y.493 Salt bridges: B:R.541 ADP.3: 16 residues within 4Å: Chain C: D.318, H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, R.378, Y.493, I.501, K.509, V.540, R.541 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:H.319, C:Y.320, C:G.358, C:V.359, C:G.360, C:G.360, C:K.361, C:T.362, C:S.363, C:S.363, C:L.364, C:R.378 Salt bridges: C:K.361, C:R.541

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine. Nat Commun (2023)

Release Date

2023-10-25

Peptides

Lon protease: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Lon protease

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