SMTL ID : 7yux.1

MtaLon-ADP for the spiral oligomers of hexamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: D.318, P.356, P.357, G.358, V.359, G.360, K.361, T.362, S.363, Y.493, I.501, Y.505, V.540 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.358, A:V.359, A:G.360, A:K.361, A:T.362, A:S.363, A:R.366 Salt bridges: A:K.361, A:R.366 pi-Stacking: A:H.319 pi-Cation interactions: A:H.319 ADP.2: 18 residues within 4Å: Chain B: D.318, H.319, Y.320, G.321, P.357, G.358, V.359, G.360, K.361, T.362, S.363, R.366, Y.493, I.501, Y.505, K.509, V.540, R.541 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.320, B:G.321, B:K.361, B:T.362, B:T.362, B:S.363, B:S.363, B:S.363, B:R.366, B:K.509 Salt bridges: B:R.541, B:R.541 ADP.3: 17 residues within 4Å: Chain C: H.319, Y.320, P.356, P.357, G.358, V.359, G.360, K.361, T.362, S.363, R.378, Y.493, I.501, L.506, V.540, R.541, E.544 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:H.319, C:Y.320, C:P.356, C:K.361, C:T.362, C:T.362, C:T.362, C:S.363, C:R.378, C:D.422, C:R.541 Salt bridges: C:K.361, C:R.541 ADP.4: 16 residues within 4Å: Chain D: D.318, H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, R.366, Y.493, I.501, K.509, V.540, R.541 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:H.319, D:Y.320, D:P.357, D:T.362, D:T.362, D:S.363, D:R.366, D:R.366, D:K.509, D:R.541 Salt bridges: D:R.541 ADP.5: 12 residues within 4Å: Chain F: H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, Y.493, I.501, V.540 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.358, F:V.359, F:G.360, F:K.361, F:T.362, F:T.362, F:S.363, F:Y.493, F:Y.493 Salt bridges: F:K.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine. Nat Commun (2023)

Release Date

2023-10-25

Peptides

Lon protease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
D

E
F

F
B

Lon protease

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