- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-mer
- Ligands
- 4 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.1: 16 residues within 4Å:- Chain A: H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, E.423, Y.493, I.501, V.540, R.541
- Chain B: E.446, R.484
19 PLIP interactions:17 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Y.320, A:G.360, A:K.361, A:K.361, A:T.362, A:T.362, A:S.363, A:S.363, A:S.363, A:Y.493, A:Y.493, A:R.541, B:R.484, B:R.484
- Salt bridges: A:K.361, A:R.541, A:R.541
- pi-Stacking: A:H.319, A:Y.505
AGS.3: 18 residues within 4Å:- Chain B: D.318, H.319, Y.320, P.357, G.358, V.359, G.360, K.361, T.362, S.363, E.423, N.472, Y.493, I.501, V.540, R.541
- Chain C: E.446, R.484
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:Y.320, B:Y.320, B:G.358, B:K.361, B:K.361, B:T.362, B:T.362, B:S.363, B:E.423, B:E.423, C:E.446, C:R.484
- Salt bridges: B:K.361, B:R.541, B:R.541
- pi-Cation interactions: B:H.319, B:H.319
AGS.9: 14 residues within 4Å:- Chain E: Y.320, L.322, P.356, P.357, G.358, V.359, G.360, K.361, T.362, Y.493, I.501, Y.505, V.540, R.541
13 PLIP interactions:13 interactions with chain E- Hydrogen bonds: E:Y.320, E:Y.320, E:P.356, E:G.358, E:V.359, E:K.361, E:T.362, E:Y.493, E:R.541, E:R.541
- Salt bridges: E:K.361, E:R.541
- pi-Stacking: E:H.319
AGS.11: 17 residues within 4Å:- Chain A: E.446, R.484
- Chain F: H.319, Y.320, P.357, V.359, G.360, K.361, T.362, S.363, E.423, N.472, Y.493, I.501, Y.505, V.540, R.541
19 PLIP interactions:17 interactions with chain F, 2 interactions with chain A- Hydrogen bonds: F:Y.320, F:V.359, F:G.360, F:K.361, F:K.361, F:T.362, F:T.362, F:S.363, F:S.363, F:S.363, F:Y.493, F:Y.493, F:R.541, A:E.446, A:R.484
- Salt bridges: F:K.361, F:R.541, F:R.541
- pi-Stacking: F:H.319
- 6 x 4KZ: N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-Nalpha-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide(Covalent)
4KZ.2: 13 residues within 4Å:- Chain A: A.601, W.602, T.603, L.610, M.633, P.673, K.674, D.675, G.676, P.677, S.678, A.679, K.721
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.601, A:L.610, A:A.679
- Hydrogen bonds: A:W.602, A:W.602, A:D.675, A:D.675, A:G.676, A:S.678, A:A.679, A:K.721
4KZ.4: 15 residues within 4Å:- Chain B: L.600, A.601, W.602, T.603, L.610, M.633, P.673, K.674, D.675, G.676, P.677, S.678, A.679, G.716, K.721
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.601, B:W.602, B:L.610, B:A.679
- Hydrogen bonds: B:W.602, B:D.675, B:D.675, B:S.678, B:K.721
4KZ.6: 15 residues within 4Å:- Chain C: L.600, A.601, W.602, T.603, L.610, M.633, T.672, P.673, K.674, D.675, G.676, P.677, S.678, A.679, K.721
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:A.601, C:L.610, C:K.674, C:A.679
- Hydrogen bonds: C:W.602, C:W.602, C:D.675, C:D.675, C:D.675, C:S.678, C:K.721
4KZ.8: 13 residues within 4Å:- Chain D: A.601, W.602, T.603, L.610, M.633, P.673, K.674, D.675, G.676, P.677, S.678, A.679, K.721
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:A.601, D:W.602, D:L.610, D:A.679
- Hydrogen bonds: D:W.602, D:W.602, D:D.675, D:S.678, D:K.721
4KZ.10: 14 residues within 4Å:- Chain E: L.600, A.601, W.602, T.603, L.610, M.633, T.672, P.673, K.674, D.675, G.676, P.677, S.678, K.721
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:A.601, E:L.610
- Hydrogen bonds: E:W.602, E:W.602, E:D.675, E:D.675, E:S.678, E:K.721
4KZ.12: 14 residues within 4Å:- Chain F: A.601, W.602, T.603, T.608, L.610, T.672, P.673, K.674, D.675, G.676, P.677, S.678, A.679, K.721
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:L.610, F:K.674, F:A.679
- Hydrogen bonds: F:W.602, F:W.602, F:D.675, F:D.675, F:S.678, F:K.721
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.5: 14 residues within 4Å:- Chain C: H.319, Y.320, G.358, V.359, G.360, K.361, T.362, S.363, Y.493, L.506, K.509, V.540, R.541, E.544
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:Y.320, C:Y.320, C:G.358, C:G.360, C:K.361, C:T.362, C:T.362, C:T.362, C:S.363
- Salt bridges: C:K.361, C:R.541
- pi-Cation interactions: C:H.319, C:H.319
ADP.7: 15 residues within 4Å:- Chain D: D.318, H.319, Y.320, L.322, P.357, G.358, V.359, G.360, K.361, T.362, S.363, Y.493, I.501, Y.505, V.540
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:Y.320, D:Y.320, D:G.358, D:G.360, D:K.361, D:T.362, D:T.362, D:T.362, D:S.363, D:Y.493
- pi-Stacking: D:H.319
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, S. et al., Complete three-dimensional structures of the Lon protease translocating a protein substrate. Sci Adv (2021)
- Release Date
- 2021-11-03
- Peptides
- Lon protease: ABCDEF
Alpha-S1-casein: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
DD
EE
FF
AG
S
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-mer
- Ligands
- 4 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 6 x 4KZ: N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-Nalpha-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide(Covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, S. et al., Complete three-dimensional structures of the Lon protease translocating a protein substrate. Sci Adv (2021)
- Release Date
- 2021-11-03
- Peptides
- Lon protease: ABCDEF
Alpha-S1-casein: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
DD
EE
FF
AG
S