SMTL ID : 7yxp.1

Crystal structure of WT AncGR2-LBD WT bound to dexamethasone and SHP coregulator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.36 Å

Oligo State

hetero-1-1-mer

Ligands

2 x DEX: DEXAMETHASONE(Non-covalent)

DEX.1: 19 residues within 4Å: Chain A: M.32, L.35, N.36, L.38, G.39, Q.42, W.72, M.73, M.76, L.80, R.83, F.95, Q.114, L.204, F.207, C.208, T.211, V.219, F.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.35, A:L.38, A:W.72, A:M.76, A:L.80, A:Q.114 Hydrogen bonds: A:L.35, A:N.36, A:R.83, A:T.211 DEX.2: 2 residues within 4Å: Chain A: N.183, W.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.183

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: P.13, E.14, S.45, K.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jimenez-Panizo, A. et al., The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities. Nucleic Acids Res. (2022)

Release Date

2022-12-07

Peptides

Ancestral Glucocorticoid Receptor2: A
SHP NR Box 1 Peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ancestral Glucocorticoid Receptor2

SHP NR Box 1 Peptide

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