SMTL ID : 7zba.2 (1 other biounit)

HaloTag with Me-TRaQ-G ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x IL7: 4-(7-azanyl-5,5-dimethyl-3-methylimino-benzo[b][1]benzosilin-10-yl)-N-[2-[2-(6-chloranylhexoxy)ethoxy]ethyl]-3-methyl-benzamide(Covalent)

IL7.1: 30 residues within 4Å: Chain A: N.41, P.42, D.106, W.107, I.132, W.141, F.144, A.145, T.148, F.149, A.151, F.152, V.157, L.161, Q.165, V.167, F.168, E.170, G.171, T.172, L.173, M.175, G.176, L.209, V.245, L.246, L.271, N.272, L.273 Ligands: CL.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.106, A:T.148, A:L.161, A:L.161, A:V.167, A:T.172, A:N.272 Hydrogen bonds: A:F.144 Water bridges: A:T.148

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: T.33, H.59, V.101, K.124, L.290, L.293 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.59 GOL.3: 6 residues within 4Å: Chain A: K.263, V.265, D.266, L.281, E.285 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.263, A:E.285 Water bridges: A:D.266, A:E.285, A:R.288 GOL.4: 6 residues within 4Å: Chain A: L.237, K.263, R.288, W.289, T.292 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.5: 6 residues within 4Å: Chain A: I.4, D.277, N.278, P.279, D.280, L.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.278, A:N.278, A:D.280 GOL.7: 1 residues within 4Å: Chain A: D.82 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 8 residues within 4Å: Chain A: N.41, W.107, F.149, F.168, F.205, P.206, L.209 Ligands: IL7.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Emmert, S. et al., A locally activatable sensor for robust quantification of organellar glutathione. Nat.Chem. (2023)

Release Date

2023-02-01

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Haloalkane dehalogenase

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