SMTL ID : 7zbb.1 (1 other biounit)

HaloTag with TRaQ-G-ctrl ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ILJ: (E)-[7-azanyl-10-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-5,5-dimethyl-benzo[b][1]benzosilin-3-ylidene]-methyl-azanium(Covalent)

ILJ.1: 24 residues within 4Å: Chain A: N.41, D.106, W.107, I.132, F.144, A.145, T.148, F.149, L.161, Q.165, V.167, F.168, E.170, G.171, T.172, P.174, M.175, G.176, L.209, V.245, L.246, N.272, L.273 Ligands: CL.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.106, A:L.161, A:V.167, A:T.172, A:N.272 Hydrogen bonds: A:Q.165, A:Q.165, A:T.172

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: D.89, E.93, W.115, R.118, N.119, R.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.93, A:E.93, A:N.119 Water bridges: A:E.93 GOL.3: 7 residues within 4Å: Chain A: F.8, S.44, Y.46, K.71, H.188, E.191, P.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.44, A:H.188 Water bridges: A:K.71 GOL.4: 6 residues within 4Å: Chain A: F.80, R.204, E.208, P.215, N.217, I.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.217, A:N.217, A:N.217

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: N.41, W.107, F.168, F.205, P.206 Ligands: ILJ.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Emmert, S. et al., A locally activatable sensor for robust quantification of organellar glutathione. Nat.Chem. (2023)

Release Date

2023-02-01

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase

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