- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
ADN.2: 20 residues within 4Å:- Chain A: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.1, K.6, HG.7
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.66, A:Q.68, A:T.168, A:K.197, A:K.197, A:H.326, A:H.385
ADN.13: 19 residues within 4Å:- Chain B: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.12, HG.18
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Q.68, B:T.69, B:E.167, B:T.168, B:T.168, B:K.197, B:K.197, B:H.326, B:H.385
ADN.23: 19 residues within 4Å:- Chain C: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.22, HG.28
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:T.66, C:Q.68, C:T.168, C:K.197, C:K.197, C:H.326, C:H.385
ADN.34: 20 residues within 4Å:- Chain D: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.33, K.36, HG.37
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:Q.68, D:T.69, D:E.167, D:T.168, D:T.168, D:K.197, D:K.197, D:H.326, D:H.385
- 2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
BU1.3: 5 residues within 4Å:- Chain A: K.17, V.18, A.19, W.111, E.118
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.17, A:E.118
- Water bridges: A:V.18, A:V.18
BU1.35: 3 residues within 4Å:- Chain D: K.17, V.18, W.111
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.118
- 7 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.4: 3 residues within 4Å:- Chain A: T.14, Y.16, K.17
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.16
PDO.5: 4 residues within 4Å:- Chain A: K.17, E.117, E.118, W.121
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.118
- Hydrogen bonds: A:K.17, A:E.117
PDO.14: 2 residues within 4Å:- Chain B: Y.16
- Ligands: PDO.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.16
PDO.15: 5 residues within 4Å:- Chain B: K.17, V.18, W.111, E.118
- Ligands: PDO.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.118
PDO.24: 3 residues within 4Å:- Chain C: K.17, V.18, W.111
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.17, C:E.118
- Water bridges: C:V.18
PDO.25: 2 residues within 4Å:- Chain C: T.14, Y.16
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.16
PDO.26: 5 residues within 4Å:- Chain C: G.458, V.459, P.464, K.466, P.467
2 PLIP interactions:2 interactions with chain C- Water bridges: C:G.458, C:K.466
- 4 x K: POTASSIUM ION(Non-covalent)
K.6: 5 residues within 4Å:- Chain A: Q.68, T.383, G.384, H.385
- Ligands: ADN.2
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.383, A:T.383, A:H.385, H2O.9, H2O.11
K.16: 4 residues within 4Å:- Chain B: Q.68, T.383, G.384, H.385
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.383, B:T.383, B:H.385, H2O.23, H2O.31
K.27: 5 residues within 4Å:- Chain C: Q.68, T.383, G.384, H.385, P.386
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:T.383, C:T.383, C:H.385, H2O.49, H2O.50
K.36: 5 residues within 4Å:- Chain D: Q.68, T.383, G.384, H.385
- Ligands: ADN.34
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:T.383, D:T.383, D:H.385, H2O.65, H2O.68
- 20 x HG: MERCURY (II) ION(Non-covalent)
HG.7: 5 residues within 4Å:- Chain A: H.64, C.88, D.142, H.326
- Ligands: ADN.2
Ligand excluded by PLIPHG.8: 5 residues within 4Å:- Chain A: C.62, I.63, C.88, D.141, D.142
Ligand excluded by PLIPHG.9: 4 residues within 4Å:- Chain A: W.111, E.114, E.118, C.122
Ligand excluded by PLIPHG.10: 2 residues within 4Å:- Chain A: H.173
- Chain D: Y.456
Ligand excluded by PLIPHG.11: 4 residues within 4Å:- Chain A: C.264, F.268, V.270
- Chain D: F.442
Ligand excluded by PLIPHG.17: 5 residues within 4Å:- Chain B: C.62, I.63, C.88, D.141, D.142
Ligand excluded by PLIPHG.18: 5 residues within 4Å:- Chain B: H.64, C.88, D.142, H.326
- Ligands: ADN.13
Ligand excluded by PLIPHG.19: 4 residues within 4Å:- Chain B: W.111, E.114, E.118, C.122
Ligand excluded by PLIPHG.20: 4 residues within 4Å:- Chain B: C.264, F.268, V.270
- Chain C: F.442
Ligand excluded by PLIPHG.21: 3 residues within 4Å:- Chain B: H.173, D.177
- Chain C: Y.456
Ligand excluded by PLIPHG.28: 5 residues within 4Å:- Chain C: H.64, C.88, D.142, H.326
- Ligands: ADN.23
Ligand excluded by PLIPHG.29: 5 residues within 4Å:- Chain C: C.62, I.63, C.88, D.141, D.142
Ligand excluded by PLIPHG.30: 4 residues within 4Å:- Chain C: W.111, E.114, E.118, C.122
Ligand excluded by PLIPHG.31: 4 residues within 4Å:- Chain B: F.442
- Chain C: C.264, F.268, V.270
Ligand excluded by PLIPHG.32: 3 residues within 4Å:- Chain B: Y.456
- Chain C: H.173, D.177
Ligand excluded by PLIPHG.37: 5 residues within 4Å:- Chain D: H.64, C.88, D.142, H.326
- Ligands: ADN.34
Ligand excluded by PLIPHG.38: 4 residues within 4Å:- Chain D: C.62, I.63, C.88, D.142
Ligand excluded by PLIPHG.39: 4 residues within 4Å:- Chain D: W.111, E.114, E.118, C.122
Ligand excluded by PLIPHG.40: 4 residues within 4Å:- Chain A: F.442
- Chain D: C.264, F.268, V.270
Ligand excluded by PLIPHG.41: 5 residues within 4Å:- Chain A: E.455, Y.456, G.458
- Chain D: H.173, D.177
Ligand excluded by PLIP- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of Pseudomonas aeruginosa S-adenosyl-L-homocysteine hydrolase inhibited by Hg2+ ions. To Be Published
- Release Date
- 2023-04-19
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
- 2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
- 7 x PDO: 1,3-PROPANDIOL(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 20 x HG: MERCURY (II) ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of Pseudomonas aeruginosa S-adenosyl-L-homocysteine hydrolase inhibited by Hg2+ ions. To Be Published
- Release Date
- 2023-04-19
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D