- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADE: ADENINE(Non-covalent)
ADE.2: 12 residues within 4Å:- Chain A: H.64, T.66, Q.68, T.69, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.1, PO4.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.68, A:T.69, A:H.385
ADE.10: 13 residues within 4Å:- Chain B: I.63, H.64, T.66, Q.68, T.69, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.9, PO4.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.68, B:H.385
ADE.16: 12 residues within 4Å:- Chain C: H.64, T.66, Q.68, T.69, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.15, PO4.20
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.66, C:Q.68, C:H.385
ADE.27: 12 residues within 4Å:- Chain D: H.64, T.66, Q.68, T.69, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.26, PO4.32
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.66, D:Q.68, D:T.69, D:H.385
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 4 residues within 4Å:- Chain A: Q.68, T.383, G.384, H.385
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.383, A:T.383, A:H.385, H2O.8, H2O.8
K.11: 5 residues within 4Å:- Chain B: Q.68, T.383, G.384, H.385, P.386
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.383, B:T.383, B:H.385, H2O.7, H2O.22
K.18: 4 residues within 4Å:- Chain C: Q.68, T.383, G.384, H.385
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:T.383, C:T.383, C:H.385, H2O.36, H2O.38
K.29: 4 residues within 4Å:- Chain D: Q.68, T.383, G.384, H.385
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:T.383, D:T.383, D:H.385, H2O.51, H2O.53
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 6 residues within 4Å:- Chain A: K.313, A.314, L.315, K.316, K.317, R.354
Ligand excluded by PLIPPO4.5: 4 residues within 4Å:- Chain A: R.28, I.32, E.35
- Chain B: H.363
Ligand excluded by PLIPPO4.6: 10 residues within 4Å:- Chain A: H.64, D.142, E.167, T.168, K.197, D.201, H.385, M.390
- Ligands: NAD.1, ADE.2
Ligand excluded by PLIPPO4.12: 4 residues within 4Å:- Chain A: H.363
- Chain B: R.28, I.32, E.35
Ligand excluded by PLIPPO4.13: 6 residues within 4Å:- Chain B: K.313, A.314, L.315, K.316, K.317, R.354
Ligand excluded by PLIPPO4.14: 10 residues within 4Å:- Chain B: H.64, D.142, E.167, T.168, K.197, D.201, H.385, M.390
- Ligands: NAD.9, ADE.10
Ligand excluded by PLIPPO4.19: 4 residues within 4Å:- Chain C: R.28, I.32, E.35
- Chain D: H.363
Ligand excluded by PLIPPO4.20: 10 residues within 4Å:- Chain C: H.64, D.142, E.167, T.168, K.197, D.201, H.385, M.390
- Ligands: NAD.15, ADE.16
Ligand excluded by PLIPPO4.21: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPO4.22: 6 residues within 4Å:- Chain C: G.458, V.459, P.464, F.465, K.466, P.467
Ligand excluded by PLIPPO4.23: 6 residues within 4Å:- Chain C: K.313, A.314, L.315, K.316, K.317, R.354
Ligand excluded by PLIPPO4.24: 2 residues within 4Å:- Chain C: E.148, I.149
Ligand excluded by PLIPPO4.30: 6 residues within 4Å:- Chain D: K.313, A.314, L.315, K.316, K.317, R.354
Ligand excluded by PLIPPO4.31: 4 residues within 4Å:- Chain C: H.363
- Chain D: R.28, I.32, E.35
Ligand excluded by PLIPPO4.32: 10 residues within 4Å:- Chain D: H.64, D.142, E.167, T.168, K.197, D.201, H.385, M.390
- Ligands: NAD.26, ADE.27
Ligand excluded by PLIPPO4.33: 6 residues within 4Å:- Chain D: G.458, V.459, P.464, F.465, K.466, P.467
Ligand excluded by PLIP- 3 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)
AES.7: 8 residues within 4Å:- Chain A: A.40, G.43, L.44, A.395, L.399, E.433, V.434, E.437
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:E.437
- Water bridges: A:R.46, A:E.437, A:K.440, A:K.440, A:K.440
AES.8: 7 residues within 4Å:- Chain A: E.116, Y.119, E.120, D.145, E.148, I.149, K.152
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.119, A:E.120, A:E.148, A:I.149
- Hydrogen bonds: A:E.116
AES.25: 8 residues within 4Å:- Chain C: A.40, G.43, L.44, A.395, L.399, E.433, V.434, E.437
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:E.437
- Hydrogen bonds: C:E.437
- Water bridges: C:K.440, C:K.440
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.17: 8 residues within 4Å:- Chain B: D.468, T.469, Y.470, R.471
- Chain C: D.468, T.469, Y.470, R.471
No protein-ligand interaction detected (PLIP)DMS.28: 8 residues within 4Å:- Chain A: D.468, T.469, Y.470, R.471
- Chain D: D.468, T.469, Y.470, R.471
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.471
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with fragment F2X-Entry F11. To be published
- Release Date
- 2024-02-21
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADE: ADENINE(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of S-adenosyl-L-homocysteine hydrolase from P. aeruginosa in complex with fragment F2X-Entry F11. To be published
- Release Date
- 2024-02-21
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D