- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.16 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
ADN.2: 20 residues within 4Å:- Chain A: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.1, K.4, CO.5
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.66, A:Q.68, A:T.168, A:K.197, A:K.197, A:H.385
ADN.10: 20 residues within 4Å:- Chain B: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.9, K.12, CO.13
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Q.68, B:E.167, B:T.168, B:T.168, B:K.197, B:K.197, B:H.385
ADN.18: 18 residues within 4Å:- Chain C: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, H.385, M.390, F.394
- Ligands: NAD.17, CO.23
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.66, C:Q.68, C:T.168, C:K.197, C:K.197, C:H.385
ADN.27: 19 residues within 4Å:- Chain D: H.64, T.66, Q.68, T.69, D.142, E.167, T.168, K.197, D.201, H.326, L.376, L.379, T.383, G.384, H.385, M.390, F.394
- Ligands: NAD.26, CO.31
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:Q.68, D:T.69, D:E.167, D:T.168, D:T.168, D:K.197, D:K.197, D:H.326, D:H.385
- 3 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.3: 4 residues within 4Å:- Chain A: K.17, V.18, W.111, E.118
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.17, A:V.18
PDO.11: 4 residues within 4Å:- Chain B: K.17, V.18, W.111, E.118
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.18
- Water bridges: B:E.118
PDO.29: 3 residues within 4Å:- Chain D: K.17, V.18, W.111
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.17
- Water bridges: D:V.18, D:V.18
- 4 x K: POTASSIUM ION(Non-covalent)
K.4: 6 residues within 4Å:- Chain A: Q.68, T.383, G.384, H.385, P.386
- Ligands: ADN.2
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.383, A:T.383, A:H.385, H2O.7
K.12: 5 residues within 4Å:- Chain B: Q.68, T.383, G.384, H.385
- Ligands: ADN.10
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.383, B:T.383, B:H.385, H2O.21
K.22: 4 residues within 4Å:- Chain C: Q.68, T.383, G.384, H.385
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:T.383, C:T.383, C:H.385, H2O.37
K.30: 5 residues within 4Å:- Chain D: Q.68, T.383, G.384, H.385, P.386
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:T.383, D:T.383, D:H.385, H2O.55, H2O.58
- 15 x CO: COBALT (II) ION(Non-covalent)
CO.5: 6 residues within 4Å:- Chain A: H.64, C.88, D.142, G.143, H.326
- Ligands: ADN.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.88, A:D.142, A:D.142, A:H.326
CO.6: 1 residues within 4Å:- Chain A: H.403
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:H.403, H2O.10, H2O.12, H2O.12, H2O.15, H2O.17
CO.7: 3 residues within 4Å:- Chain A: H.173, D.177
- Chain D: Y.456
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.173, A:D.177, H2O.2, H2O.14, H2O.57
CO.8: 1 residues within 4Å:- Chain A: H.173
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.173
CO.13: 6 residues within 4Å:- Chain B: H.64, C.88, D.142, G.143, H.326
- Ligands: ADN.10
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.88, B:D.142, B:D.142, B:H.326
CO.14: 3 residues within 4Å:- Chain B: H.403, Q.407, E.424
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:H.403, H2O.29, H2O.30, H2O.30, H2O.30
CO.15: 3 residues within 4Å:- Chain B: H.173, D.177
- Chain C: Y.456
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.173, B:D.177, H2O.45
CO.16: 1 residues within 4Å:- Chain B: H.363
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.363, H2O.31
CO.23: 6 residues within 4Å:- Chain C: H.64, C.88, D.142, G.143, H.326
- Ligands: ADN.18
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.88, C:D.142, C:D.142, C:H.326
CO.24: 1 residues within 4Å:- Chain C: H.403
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:H.403, H2O.41, H2O.41, H2O.47, H2O.49
CO.25: 3 residues within 4Å:- Chain B: Y.456
- Chain C: H.173, D.177
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:H.173, C:D.177, H2O.37, H2O.47, H2O.48
CO.31: 6 residues within 4Å:- Chain D: H.64, C.88, D.142, G.143, H.326
- Ligands: ADN.27
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.88, D:D.142, D:D.142, D:H.326
CO.32: 2 residues within 4Å:- Chain D: H.403, Q.407
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.403, H2O.59, H2O.63
CO.33: 3 residues within 4Å:- Chain A: Y.456
- Chain D: H.173, D.177
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.173, D:D.177, H2O.52
CO.34: 1 residues within 4Å:- Chain D: H.173
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.173
- 2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.21: 5 residues within 4Å:- Chain C: E.148, H.151, K.152, M.178, T.183
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:H.151, C:K.152
- Hydrogen bonds: C:E.148, C:K.152
HEZ.28: 5 residues within 4Å:- Chain D: E.148, H.151, K.152, M.178, T.183
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:H.151
- Hydrogen bonds: D:E.148, D:K.152
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of Pseudomonas aeruginosa S-adenosyl-L-homocysteine hydrolase inhibited by Co2+ ions. To Be Published
- Release Date
- 2023-04-19
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.16 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
- 3 x PDO: 1,3-PROPANDIOL(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 15 x CO: COBALT (II) ION(Non-covalent)
- 2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Crystal structure of Pseudomonas aeruginosa S-adenosyl-L-homocysteine hydrolase inhibited by Co2+ ions. To Be Published
- Release Date
- 2023-04-19
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D