SMTL ID : 7zes.1

Human SLFN11 dimer bound to ssDNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x DC- DG- DC- DG- DT: DNA (5'-D(P*CP*GP*CP*GP*T)-3')(Non-covalent)

DC-DG-DC-DG-DT.1: 17 residues within 4Å: Chain A: E.660, N.661, Q.662, P.663, T.678, K.680, T.681, R.684, R.702, E.704, D.739, T.843, A.844, S.881, R.883, R.884, A.901 Protein-ligand interaction information (PLIP) not available DC-DG-DC-DG-DT.2: 17 residues within 4Å: Chain B: E.660, N.661, Q.662, P.663, T.678, K.680, T.681, R.684, R.702, E.704, D.739, T.843, A.844, S.881, R.883, R.884, A.901 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: H.313, C.315, P.317, C.349, C.350 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.313, A:C.315, A:C.349, A:C.350 ZN.5: 4 residues within 4Å: Chain B: H.313, C.315, C.349, C.350 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.313, B:C.315, B:C.349, B:C.350

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: E.237, E.242, F.243, K.244, D.280 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.237, A:E.237, A:E.242 MG.6: 5 residues within 4Å: Chain B: E.237, E.242, F.243, K.244, D.280 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.237, B:E.237, B:E.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metzner, F.J. et al., Mechanistic understanding of human SLFN11. Nat Commun (2022)

Release Date

2022-09-28

Peptides

Schlafen family member 11: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Schlafen family member 11

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