SMTL ID : 7zit.1

14-3-3 in complex with SARS-COV2 N phospho-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x SER- ARG- ASN- SEP- THR- PRO- GLY: Nucleoprotein(Non-covalent)

SER-ARG-ASN-SEP-THR-PRO-GLY.1: 14 residues within 4Å: Chain A: K.49, R.56, K.120, R.127, Y.128, G.169, L.172, N.173, V.176, E.180, L.220, N.224, L.227, W.228 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.172, A:L.220, A:L.227, A:W.228 Hydrogen bonds: A:K.49, A:R.56, A:K.120, A:K.120, A:R.127, A:E.131, A:N.173, A:N.173, A:N.224, A:N.224 Water bridges: A:R.56, A:R.56 Salt bridges: A:R.56, A:R.127, A:E.180 SER-ARG-ASN-SEP-THR-PRO-GLY.2: 15 residues within 4Å: Chain B: S.45, V.46, K.49, R.56, K.120, R.127, Y.128, G.169, L.172, N.173, V.176, E.180, L.220, N.224, L.227 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.172, B:L.220, B:L.227 Hydrogen bonds: B:R.56, B:K.120, B:R.127, B:Y.128, B:E.131, B:E.131, B:N.173, B:N.173, B:N.224, B:N.224 Water bridges: B:S.45, B:S.45, B:K.49, B:K.49, B:R.56, B:R.56, B:E.180 Salt bridges: B:R.56, B:R.127, B:E.180

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: K.193, F.196, D.197, R.222, L.225 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.196 Salt bridges: A:K.193 ACT.6: 4 residues within 4Å: Chain B: K.193, F.196, D.197, R.222 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.196 Hydrogen bonds: B:D.197 Water bridges: B:D.197 Salt bridges: B:K.193

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: L.206, S.207, E.208, Y.211 No protein-ligand interaction detected (PLIP)

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.5: 5 residues within 4Å: Chain B: F.196, L.203, M.218, Q.219, R.222 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.196, B:Q.219 Salt bridges: B:R.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eisenreichova, A. et al., Structural basis for SARS-CoV-2 nucleocapsid (N) protein recognition by 14-3-3 proteins. J.Struct.Biol. (2022)

Release Date

2022-10-26

Peptides

14-3-3 protein zeta/delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

14-3-3 protein zeta/delta

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