SMTL ID : 7zkr.1

Human GABARAP in complex with stapled peptide Pen3-ortho

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: Y.27, R.30 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.30, A:R.30 Salt bridges: A:R.30 PO4.2: 4 residues within 4Å: Chain A: Y.7, K.48, K.49, K.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.49, A:K.50 PO4.3: 3 residues within 4Å: Chain A: K.8, F.13, R.16 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.8 Water bridges: A:K.8, A:F.13 Salt bridges: A:K.8, A:R.16

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain B: T.6, E.8 Ligand excluded by PLIP

1 x OXE: ORTHO-XYLENE(Covalent)

OXE.5: 5 residues within 4Å: Chain A: R.30, P.54 Chain B: X.4, Y.5, C.9 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:P.54, A:P.54, B:Y.5, B:Y.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, H. et al., Structure-Based Design of Stapled Peptides That Bind GABARAP and Inhibit Autophagy. J.Am.Chem.Soc. (2022)

Release Date

2022-08-31

Peptides

Gamma-aminobutyric acid receptor-associated protein: A
Pen3-ortho: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-aminobutyric acid receptor-associated protein

Pen3-ortho

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