- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.148, A:T.148
- Water bridges: A:R.139, A:R.139
- Salt bridges: A:R.139
SO4.4: 5 residues within 4Å:- Chain A: A.239, R.240, A.241, G.242, A.243
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.239, A:G.242, A:A.243
- Water bridges: A:A.241, A:A.241
SO4.5: 2 residues within 4Å:- Chain A: W.33, R.72
3 PLIP interactions:3 interactions with chain A- Water bridges: A:D.30, A:R.72
- Salt bridges: A:R.72
SO4.10: 4 residues within 4Å:- Chain B: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.148, B:T.148
- Water bridges: B:R.139, B:R.139
- Salt bridges: B:R.139
SO4.11: 5 residues within 4Å:- Chain B: A.239, R.240, A.241, G.242, A.243
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.239, B:G.242, B:A.243
- Water bridges: B:A.241, B:A.241
SO4.12: 2 residues within 4Å:- Chain B: W.33, R.72
3 PLIP interactions:3 interactions with chain B- Water bridges: B:D.30, B:R.72
- Salt bridges: B:R.72
SO4.17: 4 residues within 4Å:- Chain C: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.148, C:T.148
- Water bridges: C:R.139, C:R.139
- Salt bridges: C:R.139
SO4.18: 5 residues within 4Å:- Chain C: A.239, R.240, A.241, G.242, A.243
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:A.239, C:G.242, C:A.243
- Water bridges: C:A.241, C:A.241
SO4.19: 2 residues within 4Å:- Chain C: W.33, R.72
3 PLIP interactions:3 interactions with chain C- Water bridges: C:D.30, C:R.72
- Salt bridges: C:R.72
SO4.24: 4 residues within 4Å:- Chain D: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.148, D:T.148
- Water bridges: D:R.139, D:R.139
- Salt bridges: D:R.139
SO4.25: 5 residues within 4Å:- Chain D: A.239, R.240, A.241, G.242, A.243
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:A.239, D:G.242, D:A.243
- Water bridges: D:A.241, D:A.241
SO4.26: 2 residues within 4Å:- Chain D: W.33, R.72
3 PLIP interactions:3 interactions with chain D- Water bridges: D:D.30, D:R.72
- Salt bridges: D:R.72
- 4 x JOI: (2R,4S)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S)-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Non-covalent)
JOI.6: 18 residues within 4Å:- Chain A: Y.13, V.15, W.19, H.86, H.88, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.1, ZN.2
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.126, A:I.130, A:P.191
- Hydrogen bonds: A:Y.13, A:S.187, A:S.189, A:S.189
- Water bridges: A:G.229
- Salt bridges: A:H.86, A:H.91, A:H.162, A:H.227
JOI.13: 18 residues within 4Å:- Chain B: Y.13, V.15, W.19, H.86, H.88, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.8, ZN.9
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:F.126, B:I.130, B:P.191
- Hydrogen bonds: B:Y.13, B:S.187, B:S.189, B:S.189
- Water bridges: B:G.229
- Salt bridges: B:H.86, B:H.91, B:H.162, B:H.227
JOI.20: 18 residues within 4Å:- Chain C: Y.13, V.15, W.19, H.86, H.88, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.15, ZN.16
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:F.126, C:I.130, C:P.191
- Hydrogen bonds: C:Y.13, C:S.187, C:S.189, C:S.189
- Water bridges: C:G.229
- Salt bridges: C:H.86, C:H.91, C:H.162, C:H.227
JOI.27: 18 residues within 4Å:- Chain D: Y.13, V.15, W.19, H.86, H.88, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.22, ZN.23
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:F.126, D:I.130, D:P.191
- Hydrogen bonds: D:Y.13, D:S.187, D:S.189, D:S.189
- Water bridges: D:G.229
- Salt bridges: D:H.86, D:H.91, D:H.162, D:H.227
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.7: 4 residues within 4Å:- Chain A: D.122, R.200
- Chain B: R.139, I.140
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.122, B:I.140
- Water bridges: A:R.200
NA.14: 4 residues within 4Å:- Chain A: R.139, I.140
- Chain B: D.122, R.200
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.122, A:I.140
- Water bridges: B:R.200
NA.21: 4 residues within 4Å:- Chain C: D.122, R.200
- Chain D: R.139, I.140
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:I.140, C:D.122
- Water bridges: C:D.122, C:R.200
NA.28: 4 residues within 4Å:- Chain C: R.139, I.140
- Chain D: D.122, R.200
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Water bridges: D:D.122, D:R.200
- Hydrogen bonds: C:I.140, C:I.140
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Interactions of hydrolyzed beta-lactams with the L1 metallo-beta-lactamase: Crystallography supports stereoselective binding of cephem/carbapenem products. J.Biol.Chem. (2023)
- Release Date
- 2023-03-08
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x JOI: (2R,4S)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S)-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Interactions of hydrolyzed beta-lactams with the L1 metallo-beta-lactamase: Crystallography supports stereoselective binding of cephem/carbapenem products. J.Biol.Chem. (2023)
- Release Date
- 2023-03-08
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A