- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.148, A:T.148, A:T.148
- Water bridges: A:R.139
- Salt bridges: A:R.139
SO4.7: 4 residues within 4Å:- Chain B: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.148, B:T.148, B:T.148
- Water bridges: B:R.139
- Salt bridges: B:R.139
SO4.11: 4 residues within 4Å:- Chain C: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.148, C:T.148, C:T.148
- Water bridges: C:R.139
- Salt bridges: C:R.139
SO4.15: 4 residues within 4Å:- Chain D: R.139, V.146, I.147, T.148
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.148, D:T.148, D:T.148
- Water bridges: D:R.139
- Salt bridges: D:R.139
- 4 x JOU: (2R,5R)-2-[(1S)-1-[2-(cyanomethylsulfanyl)ethanoylamino]-1-methoxy-2-oxidanyl-2-oxidanylidene-ethyl]-5-[(1-methyl-1,2,3,4-tetrazol-5-yl)sulfanylmethyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Non-covalent)
JOU.4: 18 residues within 4Å:- Chain A: Y.13, W.19, H.86, H.88, A.89, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.1, ZN.2
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:P.191
- Hydrogen bonds: A:Y.13, A:S.187, A:S.189, A:S.189
- Water bridges: A:H.227, A:G.229, A:G.229
- Salt bridges: A:H.86, A:H.88, A:H.91, A:H.162, A:H.162, A:H.227
- pi-Stacking: A:H.227
JOU.8: 18 residues within 4Å:- Chain B: Y.13, W.19, H.86, H.88, A.89, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.5, ZN.6
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:P.191
- Hydrogen bonds: B:Y.13, B:S.187, B:S.189, B:S.189
- Water bridges: B:H.227, B:G.229, B:G.229
- Salt bridges: B:H.86, B:H.88, B:H.91, B:H.162, B:H.162, B:H.227
- pi-Stacking: B:H.227
JOU.12: 18 residues within 4Å:- Chain C: Y.13, W.19, H.86, H.88, A.89, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.9, ZN.10
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:P.191
- Hydrogen bonds: C:Y.13, C:S.187, C:S.189, C:S.189
- Water bridges: C:H.227, C:G.229, C:G.229
- Salt bridges: C:H.86, C:H.88, C:H.91, C:H.162, C:H.162, C:H.227
- pi-Stacking: C:H.227
JOU.16: 18 residues within 4Å:- Chain D: Y.13, W.19, H.86, H.88, A.89, D.90, H.91, F.126, I.130, H.162, S.187, S.189, P.191, H.227, G.229, A.230
- Ligands: ZN.13, ZN.14
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:P.191
- Hydrogen bonds: D:Y.13, D:S.187, D:S.189, D:S.189
- Water bridges: D:H.227, D:G.229, D:G.229
- Salt bridges: D:H.86, D:H.88, D:H.91, D:H.162, D:H.162, D:H.227
- pi-Stacking: D:H.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Interactions of hydrolyzed beta-lactams with the L1 metallo-beta-lactamase: Crystallography supports stereoselective binding of cephem/carbapenem products. J.Biol.Chem. (2023)
- Release Date
- 2023-03-08
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x JOU: (2R,5R)-2-[(1S)-1-[2-(cyanomethylsulfanyl)ethanoylamino]-1-methoxy-2-oxidanyl-2-oxidanylidene-ethyl]-5-[(1-methyl-1,2,3,4-tetrazol-5-yl)sulfanylmethyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hinchliffe, P. et al., Interactions of hydrolyzed beta-lactams with the L1 metallo-beta-lactamase: Crystallography supports stereoselective binding of cephem/carbapenem products. J.Biol.Chem. (2023)
- Release Date
- 2023-03-08
- Peptides
- Metallo-beta-lactamase L1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A