- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 27 residues within 4Å:- Chain A: K.44, G.46, G.47, R.48, V.49, G.78, A.79, G.80, R.84, F.151, A.169, E.189, N.190, V.191, G.193, I.194, Y.195, T.196, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Chain B: S.15
- Ligands: MG.1
27 PLIP interactions:24 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.47, A:R.48, A:V.49, A:A.79, A:G.80, A:R.84, A:N.190, A:Y.195, A:Y.195, A:D.198, A:N.200
- Water bridges: A:K.44, A:K.44, A:K.44, A:K.44, A:R.48, A:R.48, A:R.48, A:R.84, A:D.170, A:N.190, A:N.190, B:S.15, B:S.15, B:S.15
- Salt bridges: A:K.44, A:K.44
ATP.11: 24 residues within 4Å:- Chain B: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, T.168, D.169, K.188, D.189, E.190, G.192, L.193, Y.194, T.195, A.196, N.197, P.198, K.199, L.220, S.223, I.224
20 PLIP interactions:20 interactions with chain B- Hydrogen bonds: B:G.44, B:Q.45, B:Q.45, B:S.46, B:A.77, B:T.168, B:D.189, B:Y.194, B:Y.194, B:N.197, B:N.197, B:K.199
- Water bridges: B:G.78, B:G.78, B:G.78, B:G.78
- Salt bridges: B:K.41, B:K.41, B:K.188, B:K.188
ATP.18: 27 residues within 4Å:- Chain C: K.44, G.46, G.47, R.48, V.49, G.78, A.79, G.80, R.84, F.151, A.169, E.189, N.190, V.191, G.193, I.194, Y.195, T.196, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Chain D: S.15
- Ligands: MG.17
27 PLIP interactions:24 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:G.47, C:R.48, C:V.49, C:A.79, C:G.80, C:R.84, C:N.190, C:Y.195, C:Y.195, C:D.198, C:N.200
- Water bridges: C:K.44, C:K.44, C:K.44, C:K.44, C:R.48, C:R.48, C:R.48, C:R.84, C:D.170, C:N.190, C:N.190, D:S.15, D:S.15, D:S.15
- Salt bridges: C:K.44, C:K.44
ATP.27: 24 residues within 4Å:- Chain D: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, T.168, D.169, K.188, D.189, E.190, G.192, L.193, Y.194, T.195, A.196, N.197, P.198, K.199, L.220, S.223, I.224
20 PLIP interactions:20 interactions with chain D- Hydrogen bonds: D:G.44, D:Q.45, D:Q.45, D:S.46, D:A.77, D:T.168, D:D.189, D:Y.194, D:Y.194, D:N.197, D:N.197, D:K.199
- Water bridges: D:G.78, D:G.78, D:G.78, D:G.78
- Salt bridges: D:K.41, D:K.41, D:K.188, D:K.188
ATP.34: 27 residues within 4Å:- Chain E: K.44, G.46, G.47, R.48, V.49, G.78, A.79, G.80, R.84, F.151, A.169, E.189, N.190, V.191, G.193, I.194, Y.195, T.196, A.197, D.198, P.199, N.200, P.224, L.225, P.226
- Chain F: S.15
- Ligands: MG.33
28 PLIP interactions:25 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:G.47, E:R.48, E:V.49, E:A.79, E:G.80, E:R.84, E:N.190, E:Y.195, E:Y.195, E:D.198, E:N.200
- Water bridges: E:K.44, E:K.44, E:K.44, E:K.44, E:R.48, E:R.48, E:R.48, E:R.84, E:D.170, E:E.189, E:N.190, E:N.190, F:S.15, F:S.15, F:S.15
- Salt bridges: E:K.44, E:K.44
ATP.43: 24 residues within 4Å:- Chain F: K.41, G.43, G.44, Q.45, S.46, G.76, A.77, G.78, T.168, D.169, K.188, D.189, E.190, G.192, L.193, Y.194, T.195, A.196, N.197, P.198, K.199, L.220, S.223, I.224
20 PLIP interactions:20 interactions with chain F- Hydrogen bonds: F:G.44, F:Q.45, F:Q.45, F:S.46, F:A.77, F:T.168, F:D.189, F:Y.194, F:Y.194, F:N.197, F:N.197, F:K.199
- Water bridges: F:G.78, F:G.78, F:G.78, F:G.78
- Salt bridges: F:K.41, F:K.41, F:K.188, F:K.188
- 27 x UNL: UNKNOWN LIGAND
UNL.3: 13 residues within 4Å:- Chain A: V.127, T.131, H.139
- Chain C: H.139
- Chain E: T.131, Q.135, I.138, H.139
- Ligands: UNL.10, UNL.19, UNL.26, UNL.35, UNL.42
Ligand excluded by PLIPUNL.4: 8 residues within 4Å:- Chain A: E.128
- Chain E: P.130
- Ligands: UNL.5, UNL.20, UNL.21, UNL.36, UNL.37, UNL.45
Ligand excluded by PLIPUNL.5: 12 residues within 4Å:- Chain A: E.128, P.130, T.131, Q.135
- Chain C: E.128
- Ligands: UNL.4, UNL.6, UNL.13, UNL.20, UNL.21, UNL.36, UNL.37
Ligand excluded by PLIPUNL.6: 19 residues within 4Å:- Chain A: P.102, A.105, S.106, A.108, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, F.151, P.152, P.153, H.155
- Ligands: UNL.5, UNL.7, UNL.45
Ligand excluded by PLIPUNL.7: 10 residues within 4Å:- Chain A: P.102, L.103, H.155, H.156
- Chain F: A.111, Q.115, V.124
- Ligands: UNL.6, UNL.8, UNL.13
Ligand excluded by PLIPUNL.8: 7 residues within 4Å:- Chain A: Y.154, H.155, H.156, H.157
- Chain B: P.150
- Ligands: UNL.7, UNL.13
Ligand excluded by PLIPUNL.10: 14 residues within 4Å:- Chain A: I.138, H.139, A.142
- Chain C: I.138, H.139, A.142
- Chain E: I.138, H.139, A.142
- Ligands: UNL.3, UNL.19, UNL.26, UNL.35, UNL.42
Ligand excluded by PLIPUNL.12: 12 residues within 4Å:- Chain B: P.123, V.125, L.135, S.136
- Chain D: V.125, V.133, P.134, L.135, S.136
- Chain F: L.135
- Ligands: UNL.28, UNL.44
Ligand excluded by PLIPUNL.13: 10 residues within 4Å:- Chain A: P.130, H.155
- Chain B: D.107, P.150, K.152
- Ligands: UNL.5, UNL.7, UNL.8, UNL.20, UNL.22
Ligand excluded by PLIPUNL.19: 13 residues within 4Å:- Chain A: T.131, Q.135, I.138, H.139
- Chain C: V.127, T.131, H.139
- Chain E: H.139
- Ligands: UNL.3, UNL.10, UNL.26, UNL.35, UNL.42
Ligand excluded by PLIPUNL.20: 8 residues within 4Å:- Chain A: P.130
- Chain C: E.128
- Ligands: UNL.4, UNL.5, UNL.13, UNL.21, UNL.36, UNL.37
Ligand excluded by PLIPUNL.21: 12 residues within 4Å:- Chain C: E.128, P.130, T.131, Q.135
- Chain E: E.128
- Ligands: UNL.4, UNL.5, UNL.20, UNL.22, UNL.29, UNL.36, UNL.37
Ligand excluded by PLIPUNL.22: 19 residues within 4Å:- Chain C: P.102, A.105, S.106, A.108, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, F.151, P.152, P.153, H.155
- Ligands: UNL.13, UNL.21, UNL.23
Ligand excluded by PLIPUNL.23: 10 residues within 4Å:- Chain B: A.111, Q.115, V.124
- Chain C: P.102, L.103, H.155, H.156
- Ligands: UNL.22, UNL.24, UNL.29
Ligand excluded by PLIPUNL.24: 7 residues within 4Å:- Chain C: Y.154, H.155, H.156, H.157
- Chain D: P.150
- Ligands: UNL.23, UNL.29
Ligand excluded by PLIPUNL.26: 14 residues within 4Å:- Chain A: I.138, H.139, A.142
- Chain C: I.138, H.139, A.142
- Chain E: I.138, H.139, A.142
- Ligands: UNL.3, UNL.10, UNL.19, UNL.35, UNL.42
Ligand excluded by PLIPUNL.28: 12 residues within 4Å:- Chain B: L.135
- Chain D: P.123, V.125, L.135, S.136
- Chain F: V.125, V.133, P.134, L.135, S.136
- Ligands: UNL.12, UNL.44
Ligand excluded by PLIPUNL.29: 10 residues within 4Å:- Chain C: P.130, H.155
- Chain D: D.107, P.150, K.152
- Ligands: UNL.21, UNL.23, UNL.24, UNL.36, UNL.38
Ligand excluded by PLIPUNL.35: 13 residues within 4Å:- Chain A: H.139
- Chain C: T.131, Q.135, I.138, H.139
- Chain E: V.127, T.131, H.139
- Ligands: UNL.3, UNL.10, UNL.19, UNL.26, UNL.42
Ligand excluded by PLIPUNL.36: 8 residues within 4Å:- Chain C: P.130
- Chain E: E.128
- Ligands: UNL.4, UNL.5, UNL.20, UNL.21, UNL.29, UNL.37
Ligand excluded by PLIPUNL.37: 12 residues within 4Å:- Chain A: E.128
- Chain E: E.128, P.130, T.131, Q.135
- Ligands: UNL.4, UNL.5, UNL.20, UNL.21, UNL.36, UNL.38, UNL.45
Ligand excluded by PLIPUNL.38: 19 residues within 4Å:- Chain E: P.102, A.105, S.106, A.108, G.109, Q.110, H.113, Y.126, E.128, H.129, P.130, S.149, F.151, P.152, P.153, H.155
- Ligands: UNL.29, UNL.37, UNL.39
Ligand excluded by PLIPUNL.39: 10 residues within 4Å:- Chain D: A.111, Q.115, V.124
- Chain E: P.102, L.103, H.155, H.156
- Ligands: UNL.38, UNL.40, UNL.45
Ligand excluded by PLIPUNL.40: 7 residues within 4Å:- Chain E: Y.154, H.155, H.156, H.157
- Chain F: P.150
- Ligands: UNL.39, UNL.45
Ligand excluded by PLIPUNL.42: 14 residues within 4Å:- Chain A: I.138, H.139, A.142
- Chain C: I.138, H.139, A.142
- Chain E: I.138, H.139, A.142
- Ligands: UNL.3, UNL.10, UNL.19, UNL.26, UNL.35
Ligand excluded by PLIPUNL.44: 12 residues within 4Å:- Chain B: V.125, V.133, P.134, L.135, S.136
- Chain D: L.135
- Chain F: P.123, V.125, L.135, S.136
- Ligands: UNL.12, UNL.28
Ligand excluded by PLIPUNL.45: 10 residues within 4Å:- Chain E: P.130, H.155
- Chain F: D.107, P.150, K.152
- Ligands: UNL.4, UNL.6, UNL.37, UNL.39, UNL.40
Ligand excluded by PLIP- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.9: 8 residues within 4Å:- Chain A: P.166, R.168, D.228, R.229, A.230
- Chain B: L.16, T.17, Q.22
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.229
- Water bridges: A:R.229, A:A.230, A:A.230, B:Q.22, B:Q.22, B:Q.22
- Salt bridges: A:R.168
PO4.14: 4 residues within 4Å:- Chain B: R.209, E.241, H.261, I.265
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.209, B:H.261
PO4.15: 3 residues within 4Å:- Chain B: N.68, H.69, A.258
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.257
- Salt bridges: B:H.69
PO4.16: 4 residues within 4Å:- Chain B: P.208, R.209, H.261, I.265
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.208
- Salt bridges: B:R.209, B:H.261
PO4.25: 8 residues within 4Å:- Chain C: P.166, R.168, D.228, R.229, A.230
- Chain D: L.16, T.17, Q.22
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:R.229
- Water bridges: C:R.229, C:A.230, C:A.230, D:Q.22, D:Q.22, D:Q.22
- Salt bridges: C:R.168
PO4.30: 4 residues within 4Å:- Chain D: R.209, E.241, H.261, I.265
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:R.209, D:H.261
PO4.31: 3 residues within 4Å:- Chain D: N.68, H.69, A.258
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:L.257
- Salt bridges: D:H.69
PO4.32: 4 residues within 4Å:- Chain D: P.208, R.209, H.261, I.265
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:P.208
- Salt bridges: D:R.209, D:H.261
PO4.41: 8 residues within 4Å:- Chain E: P.166, R.168, D.228, R.229, A.230
- Chain F: L.16, T.17, Q.22
8 PLIP interactions:5 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:R.229
- Water bridges: E:R.229, E:A.230, E:A.230, F:Q.22, F:Q.22, F:Q.22
- Salt bridges: E:R.168
PO4.46: 4 residues within 4Å:- Chain F: R.209, E.241, H.261, I.265
2 PLIP interactions:2 interactions with chain F- Salt bridges: F:R.209, F:H.261
PO4.47: 3 residues within 4Å:- Chain F: N.68, H.69, A.258
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:L.257
- Salt bridges: F:H.69
PO4.48: 4 residues within 4Å:- Chain F: P.208, R.209, H.261, I.265
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:P.208
- Salt bridges: F:R.209, F:H.261
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aziz, I. et al., The molybdenum storage protein forms and deposits distinct polynuclear tungsten oxygen aggregates. J.Inorg.Biochem. (2022)
- Release Date
- 2022-08-03
- Peptides
- Molybdenum storage protein subunit alpha: ACE
Molybdenum storage protein subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 27 x UNL: UNKNOWN LIGAND
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aziz, I. et al., The molybdenum storage protein forms and deposits distinct polynuclear tungsten oxygen aggregates. J.Inorg.Biochem. (2022)
- Release Date
- 2022-08-03
- Peptides
- Molybdenum storage protein subunit alpha: ACE
Molybdenum storage protein subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B