SMTL ID : 8at5.1

native Coxsackievirus A9

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 6 residues within 4Å: Chain A: G.1, A.2, I.29, N.30, Y.31 Chain B: D.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.31 Hydrogen bonds: A:G.1

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 23 residues within 4Å: Chain B: I.95, T.97, L.107, L.113, F.115, M.117, V.119, F.121, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, S.193, N.194, Y.210, L.216, I.219, F.240 Chain D: A.24 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.95, B:Y.146, B:Y.146, B:Y.146, B:Y.192, B:Y.192, B:Y.192, B:L.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Domanska, A. et al., Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release. J.Virol. (2022)

Release Date

2022-11-16

Peptides

Capsid protein VP4: A
Capsid protein VP1: B
Capsid protein VP2: C
Capsid protein VP3: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

Capsid protein VP4

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

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