SMTL ID : 9fcz.1

Coxsackievirus A9 bound with compound 17 (CL301)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 01: ~{N}-[(3-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline

01.1: 20 residues within 4Å: Chain A: I.95, T.97, K.98, L.107, F.115, M.117, V.119, Y.146, M.181, I.183, I.186, Y.192, S.193, N.194, Y.210, L.213, N.214, L.216, I.219, F.240 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.95, A:T.97, A:V.119, A:I.183, A:I.183, A:L.216, A:F.240 pi-Stacking: A:Y.192

1 x MYR: MYRISTIC ACID

MYR.2: 5 residues within 4Å: Chain A: D.2 Chain D: G.1, A.2, I.29, Y.31 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.31 Hydrogen bonds: D:G.1, D:A.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tammaro, C. et al., SAR Analysis of Novel Coxsackie virus A9 Capsid Binders. J.Med.Chem. (2024)

Release Date

2024-10-02

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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