SMTL ID : 8b8n.1

Crystal structure of JAK2 JH2-V617F in complex with Cdk2 inhibitor IV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: N.138, C.140, K.142, R.180, W.183, K.217 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.138, A:K.142 Water bridges: A:R.180, A:R.180 GOL.2: 5 residues within 4Å: Chain A: K.72, I.147, R.148, F.159, K.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148 Water bridges: A:K.161 GOL.3: 11 residues within 4Å: Chain A: G.19, T.22, I.24, K.46, S.98, K.142, N.143, L.145, S.163, D.164 Ligands: AQG.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.46, A:K.142 Water bridges: A:T.20

1 x AQG: 4-{[6-(cyclohexylmethoxy)-7H-purin-2-yl]amino}-N,N-diethylbenzamide(Non-covalent)

AQG.4: 21 residues within 4Å: Chain A: L.16, G.17, Q.18, I.24, L.44, K.46, V.75, Q.91, E.92, F.93, V.94, K.95, F.96, G.97, S.98, T.101, Y.102, K.142, L.145, S.163 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.16, A:F.93 Hydrogen bonds: A:V.94, A:V.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Virtanen, A.T. et al., Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain. Pharmaceuticals (2023)

Release Date

2023-02-01

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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