- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.3: 7 residues within 4Å:- Chain A: Y.198, S.199, F.200, E.205, L.242, D.244, Q.246
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.199, A:S.199, A:D.244, A:Q.246
- Water bridges: A:S.199
TRS.18: 9 residues within 4Å:- Chain B: K.78, G.79, L.80, D.215, D.217, H.302, A.305, D.306
- Ligands: PEO.22
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.217, B:D.217, B:D.306
- Water bridges: B:D.215
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 2 residues within 4Å:- Chain A: L.221, K.315
No protein-ligand interaction detected (PLIP)GOL.5: 5 residues within 4Å:- Chain A: S.145, R.147, K.328, I.330
- Ligands: PEO.9
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.145, A:R.147, A:R.147, A:K.328
- Water bridges: A:N.296, A:K.328
GOL.6: 4 residues within 4Å:- Chain A: R.62, T.202, T.203, A.204
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.62, A:T.202, A:T.203, A:A.204
GOL.20: 4 residues within 4Å:- Chain B: A.105, R.108, N.167, G.168
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.108, B:N.167, B:G.168
- Water bridges: B:D.88, B:A.105, B:Q.170
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 14 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
PEO.8: 2 residues within 4Å:- Chain A: F.223, F.266
3 PLIP interactions:3 interactions with chain A- Water bridges: A:E.224, A:E.224, A:Q.263
PEO.9: 4 residues within 4Å:- Chain A: I.330, A.331, P.332
- Ligands: GOL.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.331
- Water bridges: A:A.331
PEO.10: 2 residues within 4Å:- Chain A: P.172, H.173
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.172
- Water bridges: A:H.173, A:H.173
PEO.11: 6 residues within 4Å:- Chain A: F.31, V.54, G.55, D.56, H.88, E.93
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.56, A:D.56, A:H.88, A:E.93
- Water bridges: A:E.57
PEO.12: 3 residues within 4Å:- Chain A: R.183, D.187, R.206
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.206
PEO.13: 6 residues within 4Å:- Chain A: Y.143, E.167, G.168, Y.169
- Chain B: L.411, H.571
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:Y.143, A:Y.169
- Water bridges: A:Y.143, B:R.540, B:R.540, B:R.540, B:R.540
PEO.14: 5 residues within 4Å:- Chain A: I.151, L.153, T.278, N.297, M.299
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.278, A:N.297
- Water bridges: A:N.162
PEO.21: 2 residues within 4Å:- Chain B: D.99, S.101
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.101, B:S.101
- Water bridges: B:S.101
PEO.22: 3 residues within 4Å:- Chain B: A.214, D.215
- Ligands: TRS.18
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.215, B:D.215
- Water bridges: B:P.61, B:P.61, B:D.217
PEO.23: 3 residues within 4Å:- Chain B: N.115, E.116, E.119
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.116
- Water bridges: B:E.116
PEO.24: 2 residues within 4Å:- Chain B: D.155, K.162
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.155, B:K.162
- Water bridges: B:K.162
PEO.25: 3 residues within 4Å:- Chain B: P.480, I.494, P.496
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.494
PEO.26: 4 residues within 4Å:- Chain B: T.544, G.545, G.546, A.547
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.546
PEO.27: 2 residues within 4Å:- Chain B: S.543, T.544
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.544
- Water bridges: B:S.543, B:T.544, B:G.545
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 4 residues within 4Å:- Chain B: K.78, K.85, S.86, K.104
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.86, B:S.86
- Water bridges: B:K.78, B:K.78, B:K.85, B:K.85
- Salt bridges: B:K.78, B:K.85, B:K.104
SO4.16: 2 residues within 4Å:- Chain B: S.106, R.109
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.106
- Water bridges: B:S.106, B:S.106, B:S.106
- Salt bridges: B:R.109
SO4.17: 3 residues within 4Å:- Chain B: P.39, E.40, K.67
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.40
- Water bridges: B:L.36, B:E.40, B:V.41, B:K.67
- Salt bridges: B:K.67
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teixeira-Nunes, M. et al., Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin. Plos Pathog. (2023)
- Release Date
- 2023-09-20
- Peptides
- Actin, alpha skeletal muscle, intermediate form: A
Putative Adenylate cyclase,Profilin-1: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 8bji.1
chimera of ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo fused to a proline-Rich-Domain (PRD) and profilin, bound to ADP-Mg-actin and a sulfate ion
Actin, alpha skeletal muscle, intermediate form
Putative Adenylate cyclase,Profilin-1
Related Entries With Identical Sequence
1h1v.1 | 1j6z.1 | 1kxp.1 | 1lot.1 | 1m8q.1 | 1ma9.1 | 1mvw.1 | 1nwk.1 | 1o18.1 | 1o19.1 | 1o1a.1 | 1o1b.1 | 1o1c.1 | 1o1d.1 | 1o1e.1 | 1o1f.1 | 1o1g.1 | 1qz5.1 | 1qz6.1 | 1rdw.1 | 1rfq.1 | 1s22.1 | 1wua.1 | 1y64.1 | 1yxq.1 | 2a3z.1 | 2a40.1 | 2a40.2 | 2a40.3 | 2a41.1 more...less...2a42.1 | 2a5x.1 | 2asm.1 | 2aso.1 | 2asp.1 | 2d1k.1 | 2ff3.1 | 2ff6.1 | 2fxu.1 | 2hmp.1 | 2pav.1 | 2q0r.1 | 2q0u.1 | 2q1n.1 | 2q1n.2 | 2q31.1 | 2q31.2 | 2q36.1 | 2q97.1 | 2q97.2 | 2vcp.1 | 2vcp.2 | 2y83.1 | 2zwh.1 | 3buz.1 | 3hbt.1 | 3j4k.1 | 3j8a.1 | 3jbi.1 | 3jbj.1 | 3jbk.1 | 3m1f.1 | 3m3n.1 | 3mfp.1 | 3mfp.2 | 3mfp.3 | 3sjh.1 | 3tpq.1 | 3u8x.1 | 3u8x.2 | 3u9d.1 | 3u9d.2 | 3u9z.1 | 3ue5.1 | 3ue5.2 | 3ue5.3 | 4a7f.1 | 4a7h.1 | 4a7l.1 | 4a7n.1 | 4gy2.1 | 4h03.1 | 4h0t.1 | 4h0v.1 | 4h0x.1 | 4h0y.1 | 4k41.1 | 4k42.1 | 4k42.2 | 4k42.3 | 4k42.4 | 4k43.1 | 4k43.2 | 4pl8.1 | 4v0u.6 | 4v0u.7 | 4v0u.8 | 4v0u.9 | 4v0u.10 | 5h53.1 | 5jlf.1 | 5mva.1 | 5mvy.1 | 5onv.1 | 5ooc.1 | 5ood.1 | 5ooe.1 | 5oof.1 | 5yu8.1 | 6c1d.1 | 6c1g.1 | 6c1h.1 | 6d8c.1 | 6djm.1 | 6djn.1 | 6djo.1 | 6fhl.1 | 6fm2.1 | 6kll.1 | 6kln.1 | 6kn7.1 | 6kn8.1 | 6rsw.1 | 6t1y.1 | 6t20.1 | 6t23.1 | 6t24.1 | 6t25.1 | 6upv.1 | 6upw.1 | 6yp9.1 | 7c2f.1 | 7c2f.2 | 7k20.1 | 7k21.1 | 7ko4.1 | 7ko5.1 | 7ko7.1 | 7kon.1 | 7kor.1 | 7nxv.1 | 7nxv.2 | 7nzm.1 | 7t5q.1 | 8a2r.1 | 8a2s.1 | 8a2t.1 | 8a2u.1 | 8a2y.1 | 8a2z.1 | 8bjh.1 | 8bjj.1 | 8bo1.1 | 8bo1.2 | 8br0.1 | 8br0.2 | 8br1.1 | 8br1.2 | 8dmx.1 | 8e9b.1 | 8of8.1 | 8ru0.1 | 8rv2.1 | 8syf.1 | 8uee.1 | 8viz.1 | 8vkh.1 | 9duu.1 | 9dva.1 | 9fjo.1