SMTL ID : 8c8h.1

Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-2-1-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1087, C.1090, C.1103, C.1106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1087, A:C.1090, A:C.1103, A:C.1106 ZN.2: 5 residues within 4Å: Chain E: C.326, H.328, C.363, V.365, C.366 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.326, E:H.328, E:C.363, E:C.366 ZN.4: 4 residues within 4Å: Chain J: C.49, C.52, C.59, H.62 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.49, J:C.52, J:C.59, J:H.62 ZN.5: 4 residues within 4Å: Chain J: C.90, C.93, C.130, C.135 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.90, J:C.93, J:C.130, J:C.135

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain J: D.415, D.417, D.419 Chain N: N.226 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.415, J:D.417, J:D.417, J:D.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimm, G. et al., Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme. To Be Published

Release Date

2024-01-31

Peptides

DNA-directed RNA polymerase 133 kDa polypeptide: A
DNA-directed RNA polymerase 22 kDa subunit: B
DNA-directed RNA polymerase 19 kDa subunit: C
DNA-directed RNA polymerase 18 kDa subunit: D
RNA polymerase-associated transcription-specificity factor RAP94: E
DNA-directed RNA polymerase 7 kDa subunit: F
Core protein E11: GK
Early transcription factor 82 kDa subunit: H
DNA-directed RNA polymerase 147 kDa polypeptide: J
Nucleoside triphosphatase I: L
DNA-directed RNA polymerase 35 kDa subunit: M
DNA-directed RNA polymerase 30 kDa polypeptide: N

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
F

D
G

E
I

F
J

G
R

K
Q

H
K

J
A

L
Y

M
C

N
S

DNA-directed RNA polymerase 133 kDa polypeptide

DNA-directed RNA polymerase 22 kDa subunit

DNA-directed RNA polymerase 19 kDa subunit

DNA-directed RNA polymerase 18 kDa subunit

RNA polymerase-associated transcription-specificity factor RAP94

DNA-directed RNA polymerase 7 kDa subunit

Core protein E11

Early transcription factor 82 kDa subunit

DNA-directed RNA polymerase 147 kDa polypeptide

Nucleoside triphosphatase I

DNA-directed RNA polymerase 35 kDa subunit

DNA-directed RNA polymerase 30 kDa polypeptide

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