SMTL ID : 8ccu.1

Cathepsin B1 from Schistosoma mansoni in complex with gallinamide analog 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x U9X: [(2~{S})-1-[[(2~{S})-1-[[(2~{S})-5-[(2~{S})-3-methoxy-2-(2-methylpropyl)-5-oxidanylidene-2~{H}-pyrrol-1-yl]-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl] (2~{S},3~{S})-2-(dimethylamino)-3-methyl-pentanoate(Covalent)

U9X.1: 17 residues within 4Å: Chain A: Q.25, G.29, C.31, W.32, G.69, L.70, E.73, G.74, G.75, I.76, L.77, H.112, I.124, V.178, G.200, H.201, E.247 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.76, A:L.77, A:I.124 Hydrogen bonds: A:Q.25, A:G.75, A:G.75, A:G.200 Water bridges: A:G.200, A:G.200

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.226, W.227, G.228 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubesova, P. et al., Cathepsin B1 from Schistosoma mansoni in complex with gallinamide analog 1. To Be Published

Release Date

2024-02-07

Peptides

Cathepsin B-like peptidase (C01 family): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Cathepsin B-like peptidase (C01 family)

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