SMTL ID : 8chl.2 (1 other biounit)

Human FKBP12 in complex with (1S,5S,6R)-9-((3,5-dichlorophenyl)sulfonyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,9-diazabicyclo[4.2.1]nonan-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x USV: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one(Non-covalent)

USV.1: 14 residues within 4Å: Chain A: Y.26, F.36, D.37, F.46, E.54, V.55, I.56, W.59, Y.82, H.87, I.90, I.91, L.97, F.99 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.26, A:F.36, A:D.37, A:F.46, A:W.59, A:W.59, A:Y.82, A:I.91 Hydrogen bonds: A:I.56, A:Y.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.11, R.13 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.10

3 x CD: CADMIUM ION(Non-covalent)

CD.3: 1 residues within 4Å: Chain A: E.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.5 CD.4: 2 residues within 4Å: Chain A: E.31, T.96 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.31, H2O.1 CD.5: 2 residues within 4Å: Chain A: M.49, E.54 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.54, A:E.54

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: E.5, T.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Purder, P.L. et al., Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues. Jacs Au (2023)

Release Date

2023-09-06

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidyl-prolyl cis-trans isomerase FKBP1A

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