SMTL ID : 8pdf.1

FKBP12 in complex with PROTAC 6a2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x Y5Q: (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[4-[(1~{S})-1-[(1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-ethenyl-2-oxidanylidene-3,10-diazabicyclo[4.3.1]decan-3-yl]ethyl]-1,2,3-triazol-1-yl]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide(Non-covalent)

Y5Q.1: 15 residues within 4Å: Chain A: Y.26, F.36, D.37, F.46, Q.53, E.54, V.55, I.56, W.59, Y.82, H.87, I.90, I.91, L.97, F.99 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.26, A:F.36, A:D.37, A:F.46, A:F.46, A:F.46, A:V.55, A:W.59, A:W.59, A:Y.82, A:I.90 Hydrogen bonds: A:D.37, A:I.56, A:Y.82 Water bridges: A:E.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geiger, T.M. et al., Discovery of a Potent Proteolysis Targeting Chimera Enables Targeting the Scaffolding Functions of FK506-Binding Protein 51 (FKBP51). Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2023-11-15

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase FKBP1A

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