- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x W: TUNGSTEN ION(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.5: 11 residues within 4Å:- Chain A: C.50, Y.52, C.53, G.56, C.57, L.87, C.88, K.90, G.91, P.234, I.235
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.50, A:C.53, A:C.57, A:C.88
SF4.21: 12 residues within 4Å:- Chain B: C.12, T.13, A.14, C.15, R.16, C.18, P.71, C.157, P.158, T.159, T.161, M.162
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.12, B:C.15, B:C.18, B:C.157
SF4.22: 13 residues within 4Å:- Chain B: C.74, R.75, H.76, C.77, P.80, P.81, C.82, V.103, C.121, Y.123, I.125, P.126, K.137
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.74, B:C.77, B:C.82, B:C.121
SF4.23: 12 residues within 4Å:- Chain B: F.5, C.22, K.26, K.51, Q.73, C.138, D.139, M.140, C.141, P.151, A.152, C.153
5 PLIP interactions:5 interactions with chain B,- Salt bridges: B:D.139
- Metal complexes: B:C.22, B:C.138, B:C.141, B:C.153
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 6 residues within 4Å:- Chain A: R.206, G.207, A.208, Y.462, W.492, W.765
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.207, A:A.208
- Water bridges: A:Q.447, A:Y.462
GOL.8: 11 residues within 4Å:- Chain A: Y.300, R.775, V.778, D.779, K.780, P.810, G.811, T.812, K.813, H.814, P.815
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.775, A:D.779, A:G.811, A:T.812, A:K.813, A:K.813, A:H.814
GOL.9: 8 residues within 4Å:- Chain A: N.83, E.84, G.85, S.86, K.238
- Chain B: L.150, K.155, C.157
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.84, A:K.238, A:K.238, B:K.155
GOL.11: 4 residues within 4Å:- Chain A: L.317, Y.321, Q.855, P.859
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.855, A:P.859
- Water bridges: A:L.856
GOL.13: 5 residues within 4Å:- Chain A: R.103, G.104, L.108, E.582
- Ligands: PEG.16
4 PLIP interactions:4 interactions with chain A- Water bridges: A:D.101, A:R.103, A:T.105, A:E.582
GOL.14: 6 residues within 4Å:- Chain A: D.674, K.685, K.688, L.689, Y.693, Q.710
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.688, A:Q.710
GOL.15: 4 residues within 4Å:- Chain A: S.312, F.313, L.358, K.361
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.313, A:F.313
- Water bridges: A:L.358
GOL.17: 10 residues within 4Å:- Chain A: N.228, E.231, R.256, T.258, R.259, R.884, V.885, E.911, R.946
- Chain B: H.39
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.228, A:R.256, A:R.256, A:R.259, A:R.259, A:R.946, A:R.946, B:H.39
GOL.18: 7 residues within 4Å:- Chain A: P.464, V.465, P.466, N.467, A.470, Y.476, A.479
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.467
- Water bridges: A:N.467
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.10: 7 residues within 4Å:- Chain A: Q.907, T.927, E.938, A.939, V.940, N.973, G.975
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.907
- Water bridges: A:N.973
PG4.12: 6 residues within 4Å:- Chain A: N.563, K.567, P.592, G.593, M.594, R.934
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.567
- Water bridges: A:N.563
PG4.26: 5 residues within 4Å:- Chain B: V.95, L.104, F.105, T.106, E.107
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.107
- Water bridges: B:T.106
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x ARF: FORMAMIDE(Non-covalent)
ARF.19: 3 residues within 4Å:- Chain A: V.197, P.198, A.201
No protein-ligand interaction detected (PLIP)ARF.20: 4 residues within 4Å:- Chain A: K.244
- Chain B: V.181, T.184, Y.185
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:K.244, A:K.244, B:T.184
- Water bridges: A:D.265, B:T.184, B:Y.185
ARF.25: 4 residues within 4Å:- Chain A: V.266, Y.267
- Chain B: R.60, P.63
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.267, A:Y.267, A:Q.381, B:R.60
- Water bridges: A:Q.384
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, A.R. et al., An allosteric redox switch involved in oxygen protection in a CO 2 reductase. Nat.Chem.Biol. (2024)
- Release Date
- 2023-09-27
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x W: TUNGSTEN ION(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x ARF: FORMAMIDE(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, A.R. et al., An allosteric redox switch involved in oxygen protection in a CO 2 reductase. Nat.Chem.Biol. (2024)
- Release Date
- 2023-09-27
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B