- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.3: 11 residues within 4Å:- Chain A: C.50, Y.52, C.53, G.56, C.57, L.87, C.88, K.90, G.91, P.234, I.235
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.50, A:C.53, A:C.57, A:C.88
SF4.17: 13 residues within 4Å:- Chain B: C.12, T.13, A.14, C.15, R.16, G.17, C.18, P.71, C.157, P.158, T.159, T.161, M.162
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.12, B:C.15, B:C.18, B:C.157
SF4.18: 13 residues within 4Å:- Chain B: C.74, R.75, H.76, C.77, P.81, C.82, V.103, C.121, P.122, Y.123, I.125, P.126, K.137
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.74, B:C.77, B:C.82, B:C.121
SF4.19: 11 residues within 4Å:- Chain B: F.5, C.22, K.26, K.51, C.138, D.139, M.140, C.141, P.151, A.152, C.153
5 PLIP interactions:5 interactions with chain B,- Salt bridges: B:D.139
- Metal complexes: B:C.22, B:C.138, B:C.141, B:C.153
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x W: TUNGSTEN ION(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 10 residues within 4Å:- Chain A: N.228, E.231, R.256, T.258, R.259, R.884, V.885, E.911, R.946
- Chain B: H.39
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.228, A:R.256, A:R.256, A:R.259, A:R.259, A:R.946, A:R.946
GOL.9: 6 residues within 4Å:- Chain A: D.674, K.685, K.688, L.689, Y.693, Q.710
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.688
GOL.11: 5 residues within 4Å:- Chain A: F.311, S.312, F.313, L.358, K.361
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.313, A:F.313
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.7: 7 residues within 4Å:- Chain A: R.206, G.207, Y.462, W.728, W.765, P.766, M.818
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.206, A:G.207, A:A.208
PEG.13: 5 residues within 4Å:- Chain A: Q.907, T.927, E.938, V.940, N.973
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.907, A:N.973
PEG.20: 9 residues within 4Å:- Chain B: L.50, V.103, L.104, F.105, L.135, S.136, K.137, C.138, D.139
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.105, B:K.137, B:K.137, B:D.139
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 8 residues within 4Å:- Chain A: Y.300, R.775, D.779, K.780, P.810, G.811, K.813, P.815
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.775, A:D.779, A:G.811, A:K.813
EDO.10: 2 residues within 4Å:- Chain A: K.118, F.124
No protein-ligand interaction detected (PLIP)EDO.12: 5 residues within 4Å:- Chain A: N.563, K.567, P.592, G.593, M.594
No protein-ligand interaction detected (PLIP)EDO.14: 1 residues within 4Å:- Chain A: Y.629
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.629
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, A.R. et al., An allosteric redox switch involved in oxygen protection in a CO 2 reductase. Nat.Chem.Biol. (2024)
- Release Date
- 2023-09-27
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x W: TUNGSTEN ION(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, A.R. et al., An allosteric redox switch involved in oxygen protection in a CO 2 reductase. Nat.Chem.Biol. (2024)
- Release Date
- 2023-09-27
- Peptides
- Formate dehydrogenase, alpha subunit, selenocysteine-containing: A
Formate dehydrogenase, beta subunit, putative: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B