SMTL ID : 8csx.1

Local refinement of RhAG/CE trimer in class 2 of erythrocyte ankyrin-1 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 11 residues within 4Å: Chain B: A.290, I.291, H.292, F.294, I.299, I.302, L.343, A.344, V.347, A.348, M.351 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.291, B:F.294, B:I.299, B:I.302, B:L.343, B:L.343, B:A.344, B:A.348 Hydrogen bonds: B:H.292 CLR.2: 10 residues within 4Å: Chain B: Y.180, L.183, A.184, G.187, I.188, L.322, R.323, I.324, V.373, L.377 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.180, B:L.183, B:A.184, B:I.188, B:R.323, B:I.324, B:V.373, B:V.373, B:L.377

2 x AJP: Digitonin(Non-covalent)

AJP.3: 12 residues within 4Å: Chain C: A.290, I.291, F.294, I.298, I.299, V.340, L.343, A.344, V.347, A.348, M.351, A.353 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.294, C:I.298, C:I.298, C:I.299, C:L.343, C:V.347, C:A.348, C:A.353 Hydrogen bonds: C:A.344 AJP.4: 12 residues within 4Å: Chain C: Y.180, L.183, A.184, G.187, I.188, Y.190, S.192, L.322, R.323, I.324, V.373, L.377 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.180, C:L.183, C:I.188, C:Y.190, C:R.323, C:V.373, C:L.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vallese, F. et al., Architecture of the human erythrocyte ankyrin-1 complex. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

Blood group Rh(CE) polypeptide: A
Ammonium transporter Rh type A: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
Q

Membrane

We predict this structure to be a membrane protein.
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Blood group Rh(CE) polypeptide

Ammonium transporter Rh type A

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