SMTL ID : 8cve.1

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.217, D.219, H.273 Ligands: AKG.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.217, A:D.219, A:H.273, H2O.1

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: E.90, K.93, L.94, P.148, E.149, K.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.149, A:K.150, A:K.150 EDO.7: 1 residues within 4Å: Chain A: Q.307 No protein-ligand interaction detected (PLIP) EDO.12: 5 residues within 4Å: Chain A: Q.56, D.57, E.266, K.267, E.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.267

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 1 residues within 4Å: Chain A: D.78 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.78 FMT.4: 2 residues within 4Å: Chain A: R.281, D.282 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.282 FMT.5: 5 residues within 4Å: Chain A: I.64, N.65, H.66, E.70, T.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.65, A:H.66, A:T.250, A:T.250 Water bridges: A:G.67, A:G.67 FMT.6: 5 residues within 4Å: Chain A: E.26, P.30, A.240, K.241, W.242 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.26, A:A.240, A:W.242 FMT.8: 3 residues within 4Å: Chain A: D.39, I.64, N.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65 FMT.9: 3 residues within 4Å: Chain A: H.44, L.45, E.178 No protein-ligand interaction detected (PLIP) FMT.13: 4 residues within 4Å: Chain A: F.17, K.129, D.130, P.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.129

1 x HYO: [(1S,5R)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl] (2S)-3-hydroxy-2-phenylpropanoate(Non-covalent)

HYO.10: 15 residues within 4Å: Chain A: F.103, L.107, E.116, M.196, L.198, S.214, H.217, D.219, G.220, N.221, F.289, Y.318, Y.325, L.326 Ligands: AKG.11 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.103, A:L.198, A:F.289, A:F.289, A:F.289, A:Y.325, A:Y.325 Salt bridges: A:E.116

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.11: 13 residues within 4Å: Chain A: N.200, Y.202, H.217, D.219, L.226, L.233, H.273, V.275, R.283, S.285, F.289 Ligands: FE2.1, HYO.10 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.233, A:V.275 Hydrogen bonds: A:N.200, A:N.200, A:Y.202, A:S.285 Water bridges: A:Y.202, A:S.214 Salt bridges: A:H.217, A:R.283

2 x SR: STRONTIUM ION(Non-functional Binders)

SR.14: 3 residues within 4Å: Chain A: E.92, Q.95, G.98 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.92, A:E.92, A:G.98, H2O.10 SR.15: 1 residues within 4Å: Chain A: N.145 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.3, H2O.6, H2O.8, H2O.10, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wenger, E.S. et al., Structure of the L289F H6H hydroxylation reactant complex. To Be Published

Release Date

2023-11-22

Peptides

Hyoscyamine 6-beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyoscyamine 6-beta-hydroxylase

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