SMTL ID : 8cvf.1

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and hyoscyamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: E.90, K.93, L.94, P.148, E.149, K.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.149, A:K.150, A:K.150 EDO.8: 3 residues within 4Å: Chain A: D.39, I.64, N.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.65 Water bridges: A:Q.42

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 1 residues within 4Å: Chain A: D.78 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.78 FMT.7: 4 residues within 4Å: Chain A: F.58, Q.235, E.269, G.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.235, A:E.269, A:G.270 Water bridges: A:G.270, A:I.272 FMT.9: 2 residues within 4Å: Chain A: E.123, A.124 No protein-ligand interaction detected (PLIP) FMT.10: 2 residues within 4Å: Chain A: S.330, D.331 No protein-ligand interaction detected (PLIP) FMT.11: 4 residues within 4Å: Chain A: Y.186, T.297, I.298, E.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.297, A:E.299 Water bridges: A:Y.186, A:E.299

1 x HYO: [(1S,5R)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl] (2S)-3-hydroxy-2-phenylpropanoate(Non-covalent)

HYO.3: 14 residues within 4Å: Chain A: F.103, L.107, E.116, M.196, L.198, S.214, H.217, G.220, N.221, F.289, Y.318, Y.325, L.326 Ligands: O.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.103, A:L.198, A:F.289, A:Y.325, A:Y.325, A:L.326 Water bridges: A:F.289 Salt bridges: A:E.116

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 12 residues within 4Å: Chain A: N.200, Y.202, H.217, L.226, L.233, H.273, V.275, R.283, S.285, A.287 Ligands: V.5, O.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.226, A:L.233, A:V.275 Hydrogen bonds: A:Y.202, A:S.285 Salt bridges: A:H.217, A:H.273, A:R.283

1 x V: VANADIUM ION(Non-covalent)

V.5: 5 residues within 4Å: Chain A: H.217, D.219, H.273 Ligands: SIN.4, O.6 No protein-ligand interaction detected (PLIP)

1 x O: OXYGEN ATOM(Non-covalent)

O.6: 6 residues within 4Å: Chain A: H.217, D.219, F.289 Ligands: HYO.3, SIN.4, V.5 No protein-ligand interaction detected (PLIP)

2 x SR: STRONTIUM ION(Non-functional Binders)

SR.12: 1 residues within 4Å: Chain A: G.67 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.67, H2O.2, H2O.9 SR.13: 1 residues within 4Å: Chain A: N.145 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.145, H2O.2, H2O.10, H2O.11, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wenger, E.S. et al., Structure of the L289F H6H ferryl-mimicking complex. To Be Published

Release Date

2023-11-22

Peptides

Hyoscyamine 6-beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyoscyamine 6-beta-hydroxylase

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